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arXiv · 0704.3259

Python Unleashed on Systems Biology

Christopher R. Myers·Ryan N. Gutenkunst·James. P. Sethna
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Abstract

We have built an open-source software system for the modeling of biomolecular reaction networks, SloppyCell, which is written in Python and makes substantial use of third-party libraries for numerics, visualization, and parallel programming. We highlight here some of the powerful features that Python provides that enable SloppyCell to do dynamic code synthesis, symbolic manipulation, and parallel exploration of complex parameter spaces.

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Christopher R. Myers, Ryan N. Gutenkunst, James. P. Sethna. 2007-04-24. Python Unleashed on Systems Biology. https://arxiv.org/abs/0704.3259

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