Search arXiv⌕ Search

arXiv · 0706.1504

Free Energy of Activation for the Comorosan Effect

Abstract

Initial reaction rate data for lactic dehydrogenase / pyruvate, lactic dehydrogenase / lactate and malic dehydrogenase / malate enzyme reactions were analyzed to obtain activation free energy changes of -329, -195 and -221 cal/mole, respectively, for rate increases associated with time-specific irradiation of the crystalline substrates prior to dissolution and incorporation in the reaction solutions. These energies, presumably, correspond to conformational or vibrational changes in the reactants or the activated complex. For the lactic dehydrogenase / pyruvate reaction, it is estimated that on the order of 10% of the irradiation energy (546 nm, 400 footcandles for 5 seconds) would be required to produce the observed reaction rate increase if a presumed photoproduct is consumed stoichiometrically with the pyruvate substrate. These findings are consistent with the proposition that the observed reaction rate enhancement involves photoproducts derived from oscillatory atmospheric gas reactions at the crystalline enzyme substrate surfaces rather than photo-excitations of the substrate molecules, per se.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

George E. Bass, Bernd Meibohm, James T. Dalton, Robert Sayre. 2007-06-11. Free Energy of Activation for the Comorosan Effect. https://arxiv.org/abs/0706.1504

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

A kinetic model predicts that tau-catalyzed A$β$ nucleation can raise oligomer burden without increasing plaque volume

Tau and amyloid-$β$ (A$β$) deposits co-occur in Alzheimer's disease, and tau fibrils have recently been shown in vitro to catalyze A$β$ primary nucleation in a fold-specific manner. A two-compartment kinetic model is developed here, describing tau aggregation within the neuronal soma and A$β$ aggregation in the surrounding interstitium. The adjustable coupling parameter is the fraction f$_{acc}$ of somatic tau fibrillar material accessible to interstitial A$β$. Homotypic A$β$ secondary nucleation is restricted to the accessible surface of the consolidating plaque rather than scaling with total fibril mass, which preserves the in vitro calibration of the rate constant while preventing the surface term from growing without bound over decades. Three model predictions emerge. First, the model predicts that tau-catalyzed nucleation can increase the soluble A$β$ oligomer concentration and the number of A$β$ fibrillar species, by factors of 4.6 and 2.0, respectively, at complete accessibility, while leaving total A$β$ fibril mass and plaque volume unchanged, since in the absence of clearance these are fixed by the monomer supply; oligomer burden and visible plaque burden are therefore decoupled. Second, the predicted effect requires substantial accessibility: a 50 % increase in accumulated oligomer exposure needs f$_{acc}$ $\approx$ 0.035-0.15, which is difficult to reconcile with tangles enclosed by an intact neuronal membrane and points instead to neuronal lysis and the formation of extracellular ghost tangles. Third, physiologically relevant oligomer dissociation and proteolytic turnover each suppress accumulated exposure, by approximately three orders of magnitude and, at zero tau accessibility, about seventyfold, respectively, and remove the effect on a biological-age measure entirely.

q-bio.SC↗

A Persistent Random-Walk Model of Molecular Transport in Neuronal Dendritic Trees

A two-level analytical framework is presented for modeling random walk transport of messenger ribonucleic acid (mRNA) molecules along neuronal microtubules from soma to synapses. Motivated by empirical observations of mRNA cargo motion, the transport within a dendrite is modeled by a persistent telegraph process with pauses. Theoretical expressions for the probability of traversing the dendrite and the mean time for such travel are derived for different and equal probabilities of persistence. These results are used for the construction of a semi-Markov model of motion of mRNA cargo within the whole neuron. The semi-Markov model provides the probabilities of absorption at a given synapse and corresponding mean first-passage times (MFPTs) from the soma, where mRNA is transcribed. The theoretical expressions, together with experimentally obtained parameter values, are used to calculate MFPTs for neurons with empirically reconstructed morphology. The model predicts that when retrograde persistence is stronger, the MFPT to each synapse is effectively the same. Otherwise, when the persistence is more pronounced in the anterograde direction, the transport in the neuron resembles the motion along a single dendrite -- nearly linear dependence of MFPT on the distance between soma and synapse. These findings are theoretically justified when the lengths of dendrites are considerably longer than the distance traversed during a typical run.

q-bio.SC↗

Clustering versus sorting: a mass-conserving reaction-diffusion model of planar polarity puncta

Planar cell polarity is preceded by the clustering of polarity proteins into discrete, low-turnover membrane subdomains (puncta), yet the minimal interactions that nucleate puncta, set their number, and segregate opposite orientations remain unclear. We address these questions with a mass-conserving reaction-diffusion model in which two diffusible monomers bind reversibly across a cell-cell junction into trans-complexes of two orientations, with feedback entering only through concentration-dependent rates. Above a critical density, the uniform state undergoes a long-wavelength mass-redistribution instability rather than a finite-wavelength Turing bifurcation. The form of the feedback then selects between two morphologies: broad mesas fixed by a Maxwell construction under saturating feedback, and narrow mass-limited spikes under unbounded feedback. For spikes we obtain closed-form expressions exhibiting a clean separation of amplitude (mass and feedback), width (the complex diffusion length), and spacing (the monomer screening length). Within a fast-monomer reduction we prove, for any number and arrangement of puncta, that like-oriented arrays coarsen, so multiplicity is metastable and kinetically determined. The second monomer reservoir introduces a second screening length that rate-limits competition by the harmonic mean of the monomer diffusivities, and the spectrum of a punctum remains free of oscillatory ("blinking") instabilities throughout. Finally, sign-definite cross-modulation of turnover converts clustering into orientation sorting - the mutual exclusion of orientations along a single contact: mass redistribution sets puncta number, and the sign of the cross-coupling determines whether orientations segregate. Puncta number and orientation sorting are thus governed by mathematically separable ingredients.

q-bio.SC↗