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arXiv · 1108.3426

A Spatial Calculus of Wrapped Compartments

Livio Bioglio·Cristina Calcagno·Mario Coppo·Ferruccio Damiani·Eva Sciacca·Salvatore Spinella·Angelo Troina
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Abstract

The Calculus of Wrapped Compartments (CWC) is a recently proposed modelling language for the representation and simulation of biological systems behaviour. Although CWC has no explicit structure modelling a spatial geometry, its compartment labelling feature can be exploited to model various examples of spatial interactions in a natural way. However, specifying large networks of compartments may require a long modelling phase. In this work we present a surface language for CWC that provides basic constructs for modelling spatial interactions. These constructs can be compiled away to obtain a standard CWC model, thus exploiting the existing CWC simulation tool. A case study concerning the modelling of Arbuscular Mychorrizal fungi growth is discussed.

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Livio Bioglio, Cristina Calcagno, Mario Coppo, Ferruccio Damiani, Eva Sciacca, Salvatore Spinella, Angelo Troina. 2011-08-17. A Spatial Calculus of Wrapped Compartments. https://arxiv.org/abs/1108.3426

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