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arXiv · 1210.6385

Automated family-based naming of small RNAs for next generation sequencing data using a modified MD5-digest algorithm

Guodong Liu·Zhihua Li·Yuefeng Lin·Bino John
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Abstract

We developed NameMyGene, a web tool and a stand alone program to easily generate putative family-based names for small RNA sequences so that laboratories can easily organize, analyze, and observe patterns from, the massive amount of data generated by next-generation sequencers. NameMyGene, also applicable to other emerging methods such as RNA-Seq, and Chip-Seq, solely uses the input small RNA sequence and does not require any additional data such as other sequence data sets. The web server and software is freely available (http://www.johnlab.org/NameMyGene) and is based on Java to ensure platform independency.

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Guodong Liu, Zhihua Li, Yuefeng Lin, Bino John. 2012-10-23. Automated family-based naming of small RNAs for next generation sequencing data using a modified MD5-digest algorithm. https://arxiv.org/abs/1210.6385

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