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arXiv · 1311.2281

Bayesian Analysis of ODE's: solver optimal accuracy and Bayes factors

Marcos Capistrán·J. Andrés Christen·Sophie Donnet
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Abstract

In most relevant cases in the Bayesian analysis of ODE inverse problems, a numerical solver needs to be used. Therefore, we cannot work with the exact theoretical posterior distribution but only with an approximate posterior deriving from the error in the numerical solver. To compare a numerical and the theoretical posterior distributions we propose to use Bayes Factors (BF), considering both of them as models for the data at hand. We prove that the theoretical vs a numerical posterior BF tends to 1, in the same order (of the step size used) as the numerical forward map solver does. For higher order solvers (eg. Runge-Kutta) the Bayes Factor is already nearly 1 for step sizes that would take far less computational effort. Considerable CPU time may be saved by using coarser solvers that nevertheless produce practically error free posteriors. Two examples are presented where nearly 90% CPU time is saved while all inference results are identical to using a solver with a much finer time step.

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Marcos Capistrán, J. Andrés Christen, Sophie Donnet. 2013-11-10. Bayesian Analysis of ODE's: solver optimal accuracy and Bayes factors. https://doi.org/10.1137/140976777

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