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arXiv · 1407.1524

Parameter Synthesis for Cardiac Cell Hybrid Models Using Delta-Decisions

Bing Liu·Soonho Kong·Sicun Gao·Paolo Zuliani·Edmund M. Clarke
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Abstract

A central problem in systems biology is to identify parameter values such that a biological model satisfies some behavioral constraints (\eg, time series). In this paper we focus on parameter synthesis for hybrid (continuous/discrete) models, as many biological systems can possess multiple operational modes with specific continuous dynamics in each mode. These biological systems are naturally modeled as hybrid automata, most often with nonlinear continuous dynamics. However, hybrid automata are notoriously hard to analyze --- even simple reachability for hybrid systems with linear differential dynamics is an undecidable problem. In this paper we present a parameter synthesis framework based on $δ$-complete decision procedures that sidesteps undecidability. We demonstrate our method on two highly nonlinear hybrid models of the cardiac cell action potential. The results show that our parameter synthesis framework is convenient and efficient, and it enabled us to select a suitable model to study and identify crucial parameter ranges related to cardiac disorders.

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Bing Liu, Soonho Kong, Sicun Gao, Paolo Zuliani, Edmund M. Clarke. 2014-09-10. Parameter Synthesis for Cardiac Cell Hybrid Models Using Delta-Decisions. https://arxiv.org/abs/1407.1524

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