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arXiv · 1408.4081

CloudSTRUCTURE: infer population STRUCTURE on the cloud

Liya Wang·Doreen Ware
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Abstract

We present CloudSTRUCTURE, an application for running parallel analyses with the population genetics program STRUCTURE. The HPC ready application, powered by iPlant cyber-infrastructure, provides a fast (by parallelization) and convenient (through a user friendly GUI) way to calculate like-lihood values across multiple values of K (number of genetic groups) and numbers of iterations. The results are automati-cally summarized for easier determination of the K value that best fit the data. In addition, CloudSTRUCTURE will reformat STRUCTURE output for use in downstream programs, such as TASSEL for association analysis with population structure ef-fects stratified.

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Liya Wang, Doreen Ware. 2014-08-18. CloudSTRUCTURE: infer population STRUCTURE on the cloud. https://arxiv.org/abs/1408.4081

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