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arXiv · 1504.02494

Thermodynamics of accuracy in kinetic proofreading: Dissipation and efficiency trade-offs

Riccardo Rao·Luca Peliti
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Abstract

The high accuracy exhibited by biological information transcription processes is due to kinetic proofreading, i.e., by a mechanism which reduces the error rate of the information-handling process by driving it out of equilibrium. We provide a consistent thermodynamic description of enzyme-assisted assembly processes involving competing substrates, in a Master Equation framework. We introduce and evaluate a measure of the efficiency based on rigorous non-equilibrium inequalities. The performance of several proofreading models are thus analyzed and the related time, dissipation and efficiency vs. error trade-offs exhibited for different discrimination regimes. We finally introduce and analyze in the same framework a simple model which takes into account correlations between consecutive enzyme-assisted assembly steps. This work highlights the relevance of the distinction between energetic and kinetic discrimination regimes in enzyme-substrate interactions.

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Riccardo Rao, Luca Peliti. 2015-04-09. Thermodynamics of accuracy in kinetic proofreading: Dissipation and efficiency trade-offs. https://doi.org/10.1088/1742-5468/2015/06/p06001

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