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arXiv · 1507.03572

BioNetGen 2.2: Advances in Rule-Based Modeling

Leonard A. Harris·Justin S. Hogg·Jose-Juan Tapia·John A. P. Sekar·Sanjana A. Gupta·Ilya Korsunsky·Arshi Arora·Dipak Barua·Robert P. Sheehan·James R. Faeder
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Abstract

BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation, and analysis of larger and more complex models than previously possible.

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Leonard A. Harris, Justin S. Hogg, Jose-Juan Tapia, John A. P. Sekar, Sanjana A. Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P. Sheehan, James R. Faeder. 2016-07-01. BioNetGen 2.2: Advances in Rule-Based Modeling. https://doi.org/10.1093/bioinformatics%2Fbtw469

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