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arXiv · 1606.00042

ReconMap: An interactive visualisation of human metabolism

Alberto Noronha·Anna Dröfn Danielsdóttir·Freyr Jóhannsson·Soffia Jónsdóttir·Sindri Jarlsson·Jón Pétur Gunnarsson·Sigurður Brynjólfsson·Piotr Gawron·Reinhard Schneider·Ines Thiele·Ronan M. T. Fleming
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Abstract

A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation results. We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators. ReconMap can be accessed via http://vmh.uni.lu, with network export in a Systems Biology Graphical Notation compliant format. A Constraint-Based Reconstruction and Analysis (COBRA) Toolbox extension to interact with ReconMap is available via https://github.com/opencobra/cobratoolbox.

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Alberto Noronha, Anna Dröfn Danielsdóttir, Freyr Jóhannsson, Soffia Jónsdóttir, Sindri Jarlsson, Jón Pétur Gunnarsson, Sigurður Brynjólfsson, Piotr Gawron, Reinhard Schneider, Ines Thiele, Ronan M. T. Fleming. 2016-05-31. ReconMap: An interactive visualisation of human metabolism. https://arxiv.org/abs/1606.00042

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