Search arXivSearch

arXiv · 1701.00671

From short-range repulsion to Hele-Shaw problem in a model of tumor growth

Abstract

We investigate the large time behavior of an agent based model describing tumor growth. The microscopic model combines short-range repulsion and cell division. As the number of cells increases exponentially in time, the microscopic model is challenging in terms of computational time. To overcome this problem, we aim at deriving the associated macroscopic dynamics leading here to a porous media type equation. As we are interested in the long time behavior of the dynamics, the macroscopic equation obtained through usual derivation method fails at providing the correct qualitative behavior (e.g. stationary states differ from the microscopic dynamics). We propose a modified version of the macroscopic equation introducing a density threshold for the repulsion. We numerically validate the new formulation by comparing the solutions of the micro- and macro- dynamics. Moreover, we study the asymptotic behavior of the dynamics as the repulsion between cells becomes singular (leading to non-overlapping constraints in the microscopic model). We manage to show formally that such an asymptotic limit leads to a Hele-Shaw type problem for the macroscopic dynamics. The macroscopic model derived in this paper therefore enables to overcome the problem of large computational time raised by the microscopic model and stays closely linked to the microscopic dynamics.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Sebastien Motsch, Diane Peurichard. 2017-01-03. From short-range repulsion to Hele-Shaw problem in a model of tumor growth. https://arxiv.org/abs/1701.00671

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Scale dependent chirality in twist-bend liquid crystals

The discovery of new classes of lyotropic and thermotropic liquid crystals (e.g., twist-bend, splay, and ferroelectric phases), together with significant advances in experimental techniques for their investigation, has renewed interest in a number of physical phenomena that have been studied in classical liquid crystals (nematics, cholesterics, and smectics) for more than a century. In this paper, we revisit one such ''old--new'' problem, recently highlighted in the preprint by A. Ashkinazi, H. Chhabra, A. El Moumane, M. M. C. Tortora, and J. P. K. Doye, ''Chirality Transfer in Lyotropic Twist-Bend Nematics,'' arXiv:2508.03544v1 (2025), in which various mechanisms of chirality transfer from the molecular scale to the structural scale were discussed. Here we present a simple theoretical analysis of chirality transfer within a Landau theory describing the phase transition between cholesteric and chiral twist-bend liquid crystals. We demonstrate that the handedness of the heliconical structure is opposite to that of the parent cholesteric phase. This relationship originates from the orthogonality between the cholesteric director and the vector order parameter characterizing the phase.

cond-mat.soft

Why life is hot

The process of evolution by natural selection leads to phenotypes of increasing fitness. For cellular chemical reaction networks, this means optimising a variety of fitness functions such as robustness, precision, or sensitivity to external stimuli. We argue that these diverse goals can be achieved by a versatile, generic mechanism: coupling chemical reaction networks to reservoirs that are strongly out of equilibrium. Using theory and numerics we show that this mechanism of optimisation comes at the price of significant heat dissipation. We compute the heat flux caused by kinetic proofreading in {\it Escherichia coli} and show that it constitutes a significant fraction of the total heat flux experimentally measured in this model organism. We then demonstrate that the degree of optimality achievable saturates, and that Nature appears to operate near saturation despite high energetic costs. We argue that `life is hot' largely because of the need for a versatile mechanism to optimise a variety of fitness functions.

cond-mat.soft

Understanding Structural Representation in Foundation Models for Polymers

From the relative scarcity of training data to the lack of standardized benchmarks, the creation of effective foundation models for polymers faces significant and multi-faceted challenges. At the core, many of these issues are tied directly to the structural representation of polymers. Here, we present a chemical language foundation model built on using a SMILES-based polymer graph representation (CPG) that incorporates polymer architectural features and connectivity that are often missing in other line notations. This foundation model exhibited excellent performance on 30 different polymer property benchmark datasets. Critical evaluation of the developed representation against other variations in control experiments reveals this approach to be a robust method of representing polymers in language-based foundation models. These experiments also reveal a strong invariance of structural representations to small perturbations, with many variations of structural representation exceeding or equaling state-of-the-art (SOTA) performance. Surprisingly, SMILES representations which are chemically or semantically invalid also provided near or SOTA performance in several instances--underscoring an unexamined blind spot in the development of chemistry language models. Examination of error sources and attention maps for the evaluated structural representations corroborate the findings of the control experiments, highlighting the ability of the model to interpolate SMILES sequence space in a manner that is loosely congruent to chemical and architectural space for polymers. Overall, this work highlights the surprising robustness of chemistry language models to structural representation perturbations and identifies the conditions under which CPG representation provides meaningful advantages.

cond-mat.soft