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arXiv · 1803.00200

Probability-Scale Residuals in HIV/AIDS Research: Diagnostics and Inference

Bryan E. Shepherd·Qi Liu·Valentine Wanga·Chun Li
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Abstract

The probability-scale residual (PSR) is well defined across a wide variety of variable types and models, making it useful for studies of HIV/AIDS. In this manuscript, we highlight some of the properties of the PSR and illustrate its application with HIV data. As a residual, it can be useful for model diagnostics; we demonstrate its use with ordered categorical data and semiparametric transformation models. The PSR can also be used to construct tests of residual correlation. In fact, partial Spearman's rank correlation between $X$ and $Y$ while adjusting for covariates $Z$ can be constructed as the correlation between PSRs from models of $Y$ on $Z$ and of $X$ on $Z$. The covariance of PSRs is also useful in some settings. We apply these methods to a variety of HIV datasets including 1) a study examining risk factors for more severe forms of cervical lesions among 145 women living with HIV in Zambia, 2) a study investigating the association between 21 metabolomic biomarkers among 70 HIV-positive patients in the southeastern United States, and 3) a genome wide association study investigating the association between single nucleotide polymorphisms and tenofovir clearance among 501 HIV-positive persons participating in a multi-site randomized clinical trial.

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Bryan E. Shepherd, Qi Liu, Valentine Wanga, Chun Li. 2018-03-01. Probability-Scale Residuals in HIV/AIDS Research: Diagnostics and Inference. https://arxiv.org/abs/1803.00200

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