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arXiv · 1803.04640

Bayesian Detection of Abnormal ADS in Mutant Caenorhabditis elegans Embryos

Wei Liang·Yuxiao Yang·Yusi Fang·Zhongying Zhao·Jie Hu
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Abstract

Cell division timing is critical for cell fate specification and morphogenesis during embryogenesis. How division timings are regulated among cells during development is poorly understood. Here we focus on the comparison of asynchrony of division between sister cells (ADS) between wild-type and mutant individuals of Caenorhabditis elegans. Since the replicate number of mutant individuals of each mutated gene, usually one, is far smaller than that of wild-type, direct comparison of two distributions of ADS between wild-type and mutant type, such as Kolmogorov- Smirnov test, is not feasible. On the other hand, we find that sometimes ADS is correlated with the life span of corresponding mother cell in wild-type. Hence, we apply a semiparametric Bayesian quantile regression method to estimate the 95% confidence interval curve of ADS with respect to life span of mother cell of wild-type individuals. Then, mutant-type ADSs outside the corresponding confidence interval are selected out as abnormal one with a significance level of 0.05. Simulation study demonstrates the accuracy of our method and Gene Enrichment Analysis validates the results of real data sets.

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Wei Liang, Yuxiao Yang, Yusi Fang, Zhongying Zhao, Jie Hu. 2018-03-13. Bayesian Detection of Abnormal ADS in Mutant Caenorhabditis elegans Embryos. https://arxiv.org/abs/1803.04640

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