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arXiv · 1808.09712

A local fingerprint for hydrophobicity and hydrophilicity: from methane to peptides

S. Pérez-Conesa·Pablo M. Piaggi·Michele Parrinello
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Abstract

An important characteristic that determines the behavior of a solute in water is whether it is hydrophobic or hydrophilic. The traditional classification is based on chemical experience and heuristics. However, this does not reveal how the local environment modulates this important property. We present a local fingerprint for hydrophobicity and hydrophilicity inspired by the two body contribution to the entropy. This fingerprint is an inexpensive, quantitative and physically meaningful way of studying hydrophilicity and hydrophobicity that only requires as input the water-solute radial distribution functions. We apply our fingerprint to octanol, benzene and the 20 proteinogenic amino acids. Our measure of hydrophilicity is coherent with chemical experience and, moreover, it also shows how the character of an atom can change as its environment is changed. Lastly, we use the fingerprint as collective variable in a funnel metadynamics simulation of a host-guest system. The fingerprint serves as a desolvation collective variable that enhances transitions between the bound and unbound states.

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S. Pérez-Conesa, Pablo M. Piaggi, Michele Parrinello. 2019-04-26. A local fingerprint for hydrophobicity and hydrophilicity: from methane to peptides. https://doi.org/10.1063/1.5088418

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