Search arXivSearch

arXiv · 1905.02521

Nuclear quantum effects in molecular dynamics simulations

Abstract

To take into account nuclear quantum effects on the dynamics of atoms, the path integral molecular dynamics (PIMD) method used since 1980s is based on the formalism developed by R. P. Feynman. However, the huge computation time required for the PIMD reduces its range of applicability. Another drawback is the requirement of additional techniques to access time correlation functions (ring polymer MD or centroid MD). We developed an alternative technique based on a quantum thermal bath (QTB) which reduces the computation time by a factor of ~20. The QTB approach consists in a classical Langevin dynamics in which the white noise random force is replaced by a Gaussian random force having the power spectral density given by the quantum fluctuation-dissipation theorem. The method has yielded satisfactory results for weakly anharmonic systems: the quantum harmonic oscillator, the heat capacity of a MgO crystal, and isotope effects in 7 LiH and 7 LiD. Unfortunately, the QTB is subject to the problem of zero-point energy leakage (ZPEL) in highly anharmonic systems, which is inherent in the use of classical mechanics. Indeed, a part of the energy of the high-frequency modes is transferred to the low-frequency modes leading to a wrong energy distribution. We have shown that in order to reduce or even eliminate ZPEL, it is sufficient to increase the value of the frictional coefficient. Another way to solve the ZPEL problem is to combine the QTB and PIMD techniques. It requires the modification of the power spectral density of the random force within the QTB. This combination can also be seen as a way to speed up the PIMD.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

H. Dammak, M. Hayoun, F Brieuc, G. Geneste. 2019-05-07. Nuclear quantum effects in molecular dynamics simulations. https://doi.org/10.1088/1742-6596%2F1136%2F1%2F012014

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

A subcell-refined entropy-residual-driven limiting strategy for high-order discontinuous Galerkin methods

Fine-grained, subcell-level dissipation control is essential for achieving robust high-order discontinuous Galerkin (DG) simulations of nonlinear hyperbolic systems in under-resolved regimes while preserving accuracy. This paper proposes a subcell-refined entropy-residual-driven limiting strategy for DG on Legendre-Gauss-Lobatto nodes. The limiter introduces only nearest-neighbor pairwise dissipation within each element, with closed-form coefficients that supply the minimal dissipation required to restore the element entropy inequality. The strategy is a diagonal, locally stable approximation of classical entropy-stable methods, and a generalized subcell framework reveals split-form DG and residual-distribution-based entropy correction schemes as particular choices of the limiting coefficients. For the Euler equations, a physically consistent jump operator separately models thermal and shear entropy production while preserving velocity and pressure equilibrium; a subcell refinement of the Zhang-Shu positivity limiter ensures pointwise positivity. Extensive numerical tests confirm that the scheme maintains optimal high-order accuracy, strictly enforces entropy dissipation, and significantly reduces the difficulty of a posteriori positivity-preserving procedures.

physics.comp-ph

VNS Tokamak for Medical Isotope Production

The Volumetric Neutron Source (VNS) tokamak is a proposed fusion reactor for testing components under fusion neutron irradiation, and has potential use for radioisotope production. The VNS geometry is modeled in the Serpent 2.2.2 and OpenMC 0.15.2 neutronics codes. Coupled neutron-photon simulations compared fluxes, spectra, and selected reaction rates in the blanket and vacuum vessel. Good agreement was found overall, with the largest difference found in (n, 2n) reactions. On an HPC cluster, Serpent 2 was found to have shorter computation time in coupled simulations, while OpenMC was faster in neutron only simulations. Radioisotope production yields were simulated in Serpent 2.2.2 for capsule and Cobalt plate irradiation facilities. Results indicate potential for large volume production of 99Mo, 131I, 225Ac, 177Lu, 192Ir, 64Cu, 67Cu, 161Tb, and 153Sm while 203Pb indicates lower potential. 100Mo and LEU target heating was calculated, suggesting the LEU target mass or the cooling may need adjustment. Optimized 60Co production yielded 1.2 GBq/mg and 100,000 TBq after a 3-year irradiation period. Sensitivity to plant outage for 99Mo, 131I, 177Lu, and 60Co was simulated, suggesting irradiation can be restarted for the same isotope loading and demonstrated long-lived 60Co to be robust to long plant dwell-time.

physics.comp-ph

MadVfold: accelerating NLO event generation and reducing negative weights with SIMD vectorization and GPUs

NLO simulations are essential for LHC physics analyses but are expensive, as they are not only slow but also lead to negative weights, which imply the need to simulate much larger samples of events. Folding is a powerful technique to reduce negative weights but is itself expensive. In this paper I propose ``vectorized folding'' as a new idea to speed up these calculations using SIMD and GPUs, and I present its CUDACPP-based implementation for MG5aMC in MadVfold, including its extension for unfolded NLO event generation. Preliminary results show overall speedups around 6x to 9x with folding and 3x without it. This work is based on a test-centric, LLM-assisted software development process.

physics.comp-ph