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arXiv · 1911.00942

Strong defocusing of molecular reaction times results from an interplay of geometry and reaction control

Denis S. Grebenkov·Ralf Metzler·Gleb Oshanin
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Abstract

Text-book concepts of diffusion- versus kinetic-control are well-defined for reaction-kinetics involving macroscopic concentrations of diffusive reactants that are adequately described by rate-constants -- the inverse of the mean-first-passage-time to the reaction-event. In contradistinction, an open important question is whether the mean-first-passage-time alone is a sufficient measure for biochemical reactions that involve nanomolar reactant concentrations. Here, using a simple yet generic, exactly-solvable model we study the conspiratory effect of diffusion and chemical reaction-limitations on the full reaction-time distribution. We show that it has a complex structure with four distinct regimes delimited by three characteristic time scales spanning a window of several decades. Consequently, the reaction-times are defocused: no unique time-scale characterises the reaction-process, diffusion- and kinetic-control can no longer be disentangled, and it is imperative to know the full reaction-time distribution. We introduce the concepts of geometry- and reaction-control, and also quantify each regime by calculating the corresponding reaction depth.

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Denis S. Grebenkov, Ralf Metzler, Gleb Oshanin. 2019-11-03. Strong defocusing of molecular reaction times results from an interplay of geometry and reaction control. https://doi.org/10.1038/s42004-018-0096-x

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