Search arXivSearch

arXiv · 1912.03999

Combining Networks using Cherry Picking Sequences

Abstract

Phylogenetic networks are important for the study of evolution. The number of methods to find such networks is increasing, but most such methods can only reconstruct small networks. To find bigger networks, one can attempt to combine small networks. In this paper, we study the {\sc Network Hybridization} problem, a problem of combining networks into another network with low complexity. We characterize this complexity via a restricted problem, {\sc Tree-child Network Hybridization}, and we present an FPT algorithm to efficiently solve this restricted problem.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Remie Janssen, Mark Jones, Yukihiro Murakami. 2019-12-09. Combining Networks using Cherry Picking Sequences. https://arxiv.org/abs/1912.03999

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Factorisability of Low Dimensional Non-Negative Integer Matrices

We consider the problem of determining if a given two-dimensional nonnegative integer matrix $M$ is the product of two such matrices, excluding trivial units. A matrix $M$ with no such factorisation is called prime and therefore belongs to the minimal (infinite rank) generator of $2 \times 2$ matrices over the natural numbers, otherwise it is called composite. We also consider the problem of finding a (non-unique) factorisation of a composite matrix. Our results have applications in computational group theory and the theory of codes, where such matrices are called incidence matrices. We analyse the complexity of primality and finding a factorisation for a composite matrix, providing a first efficient algorithm.

cs.DM

The parameterised complexity of generalised temporal domination on temporal graphs with modular structure

Inspired by the static problem $(α,β)$-Dominating Set, we propose a general temporal domination problem, called $(α,β)$-Temporal Dominating Set ($(α,β)$-TDS). We show that this problem encompasses Temporal Dominating Set, and additionally provides first temporal extensions of problems such as $k$-Dominating Set and $α$-Dominating Set. In this paper, we study the parameterised complexity of $(α,β)$-TDS with respect to temporal neighbourhood diversity (TND), temporal modular-width (TMW), and temporal cliquewidth (TCW). We obtain fixed parameter tractability results for all values of $α$ and $β$ with respect to TND; W[1]-hardness with respect to TMW and TCW whenever $β$ is in the problem input, or whenever $α\in (0,1)$ and $β$ is a fixed constant; and para-NP-hardness with respect to TCW when $α= 0$ and $β= 1$, or $α= 1$ and $β= 0$.

cs.DM