Search arXiv⌕ Search
Home/Archive/arXiv

arXiv · 2006.05016

Reproducible and Portable Workflows for Scientific Computing and HPC in the Cloud

Peter Vaillancourt·Bennett Wineholt·Brandon Barker·Plato Deliyannis·Jackie Zheng·Akshay Suresh·Adam Brazier·Rich Knepper·Rich Wolski
View original source ↗Read source document ↗Export metadata ↓

Abstract

The increasing availability of cloud computing services for science has changed the way scientific code can be developed, deployed, and run. Many modern scientific workflows are capable of running on cloud computing resources. Consequently, there is an increasing interest in the scientific computing community in methods, tools, and implementations that enable moving an application to the cloud and simplifying the process, and decreasing the time to meaningful scientific results. In this paper, we have applied the concepts of containerization for portability and multi-cloud automated deployment with industry-standard tools to three scientific workflows. We show how our implementations provide reduced complexity to portability of both the applications themselves, and their deployment across private and public clouds. Each application has been packaged in a Docker container with its dependencies and necessary environment setup for production runs. Terraform and Ansible have been used to automate the provisioning of compute resources and the deployment of each scientific application in a Multi-VM cluster. Each application has been deployed on the AWS and Aristotle Cloud Federation platforms. Variation in data management constraints, Multi-VM MPI communication, and embarrassingly parallel instance deployments were all explored and reported on. We thus present a sample of scientific workflows that can be simplified using the tools and our proposed implementation to deploy and run in a variety of cloud environments.

Explore related subjects

cs.DCcs.SE

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Peter Vaillancourt, Bennett Wineholt, Brandon Barker, Plato Deliyannis, Jackie Zheng, Akshay Suresh, Adam Brazier, Rich Knepper, Rich Wolski. 2020-06-09. Reproducible and Portable Workflows for Scientific Computing and HPC in the Cloud. https://doi.org/10.1145/3311790.3396659

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Reforge: Low-Latency Distributed GNN Serving with Selective Embedding Recomputation

Graph Neural Networks (GNNs) have been widely adopted for their ability to compute expressive node representations in graph datasets. However, serving GNNs on large graphs is challenging due to the high communication, computation, and memory overheads of constructing and executing computation graphs, which represent information flow across large neighborhoods. Existing approximation techniques in training can mitigate the overheads but, in serving, still lead to high latency and/or accuracy loss. To this end, we propose Reforge, a system that enables low-latency GNN serving for large graphs with minimal accuracy loss through two key ideas. First, Reforge employs selective recomputation of precomputed embeddings, which allows for reusing precomputed computation subgraphs while selectively recomputing a small fraction to minimize accuracy loss. Second, we develop computation graph parallelism, which reduces communication overhead by parallelizing the creation and execution of computation graphs across machines. Our evaluation with large graph datasets and GNN models shows that Reforge significantly outperforms state-of-the-art techniques.

cs.DC↗
arXiv2026

Agentic AI Workload Characteristics

Agentic AI shifts LLM serving from isolated prompt-generation requests to stateful, multi-turn executions that repeatedly invoke the model, call tools, and grow context over time. This paper characterizes ReAct-style agents from both the LLM-serving and tool-execution perspectives using an end-to-end tracing infrastructure across reasoning and non-reasoning Gemma and Qwen configurations on five agentic benchmarks. Our study shows that agentic workloads are not simply long-prompt workloads: with effective context caching, most input tokens are reused across turns, making execution decode-dominated while increasing dependence on long-lived KV-cache state. We also find that tool use has a clear temporal structure, with agents shifting from read/explore behavior early in execution to execute/write behavior later. These results show that efficient agentic serving must jointly manage repeated model re-entry, persistent context state, and workload-dependent tool behavior.

cs.DC↗
arXiv2026

Byzantine Causal Reliable Broadcast (BCRB) with Constant-Size Message Metadata

Asynchronous Byzantine Reliable Broadcast (BRB) is a fundamental primitive that guarantees agreement and validity in distributed systems subject to Byzantine faults, but it lacks ordering guarantees. In this paper, we address Byzantine Causal Reliable Broadcast (BCRB), which builds on BRB to enforce causal message ordering. We present a novel BCRB protocol that decouples causal ordering from the BRB layer, achieving constant-size $\mathcal{O}(1)$ message metadata overhead and $\mathcal{O}(n^2)$ communication word complexity as against $\mathcal{O}(n^3)$ communication word complexity of existing protocols; here $n$ is the number of processes. We present two variants of our protocol: a cryptographic version using a threshold encryption scheme and sequence gating, and its non-cryptographic version. In the cryptographic version, senders broadcast ciphertexts immediately, and decryption shares are piggybacked on out-of-band ACKs, preventing early decryption and front-running. In both versions, causal safety is achieved probabilistically. We evaluate the probability of causal safety violations using a random variable path analysis under independent exponential link delay distributions. We show that both variants satisfy liveness and the probability of weak safety violation is bounded by $\mathcal{O}(f^{-3}\cdot\ln^3 f)$, where $f$ is the upper bound on the number of Byzantine processes, and $f < n/3$ and $f=\mathcal{O}(n)$. Further, for the crypto version, we show that the probability of strong safety violation is bounded by $\mathcal{O}(f^{-1} \cdot \ln^2 f)$. We also show how to modify our two protocols to guarantee 100\% weak safety keeping $\mathcal{O}(1)$ message space overhead but with $\mathcal{O}(n^3)$ messages and $\mathcal{O}(n^3)$ communication word complexity.

cs.DC↗