Search arXivSearch

arXiv · 2007.13408

XCAT-GAN for Synthesizing 3D Consistent Labeled Cardiac MR Images on Anatomically Variable XCAT Phantoms

Abstract

Generative adversarial networks (GANs) have provided promising data enrichment solutions by synthesizing high-fidelity images. However, generating large sets of labeled images with new anatomical variations remains unexplored. We propose a novel method for synthesizing cardiac magnetic resonance (CMR) images on a population of virtual subjects with a large anatomical variation, introduced using the 4D eXtended Cardiac and Torso (XCAT) computerized human phantom. We investigate two conditional image synthesis approaches grounded on a semantically-consistent mask-guided image generation technique: 4-class and 8-class XCAT-GANs. The 4-class technique relies on only the annotations of the heart; while the 8-class technique employs a predicted multi-tissue label map of the heart-surrounding organs and provides better guidance for our conditional image synthesis. For both techniques, we train our conditional XCAT-GAN with real images paired with corresponding labels and subsequently at the inference time, we substitute the labels with the XCAT derived ones. Therefore, the trained network accurately transfers the tissue-specific textures to the new label maps. By creating 33 virtual subjects of synthetic CMR images at the end-diastolic and end-systolic phases, we evaluate the usefulness of such data in the downstream cardiac cavity segmentation task under different augmentation strategies. Results demonstrate that even with only 20% of real images (40 volumes) seen during training, segmentation performance is retained with the addition of synthetic CMR images. Moreover, the improvement in utilizing synthetic images for augmenting the real data is evident through the reduction of Hausdorff distance up to 28% and an increase in the Dice score up to 5%, indicating a higher similarity to the ground truth in all dimensions.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Sina Amirrajab, Samaneh Abbasi-Sureshjani, Yasmina Al Khalil, Cristian Lorenz, Juergen Weese, Josien Pluim, Marcel Breeuwer. 2020-07-31. XCAT-GAN for Synthesizing 3D Consistent Labeled Cardiac MR Images on Anatomically Variable XCAT Phantoms. https://arxiv.org/abs/2007.13408

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

VideoPulse: Neonatal heart rate and peripheral capillary oxygen saturation (SpO2) estimation from contact free video

Remote photoplethysmography (rPPG) enables contact free monitoring of vital signs and is especially valuable for neonates, since conventional methods often require sustained skin contact with adhesive probes that can irritate fragile skin and increase infection control burden. We present VideoPulse, a neonatal dataset and an end to end pipeline that estimates neonatal heart rate and peripheral capillary oxygen saturation (SpO2) from facial video. VideoPulse contains 157 recordings totaling 2.6 hours from 52 neonates with diverse face orientations. Our pipeline performs face alignment and artifact aware supervision using denoised pulse oximeter signals, then applies 3D CNN backbones for heart rate and SpO2 regression with label distribution smoothing and weighted regression for SpO2. Predictions are produced in 2 second windows. On the NBHR neonatal dataset, we obtain heart rate MAE 2.97 bpm using 2 second windows (2.80 bpm at 6 second windows) and SpO2 MAE 1.69 percent. Under cross dataset evaluation, the NBHR trained heart rate model attains 5.34 bpm MAE on VideoPulse, and fine tuning an NBHR pretrained SpO2 model on VideoPulse yields MAE 1.68 percent. These results indicate that short unaligned neonatal video segments can support accurate heart rate and SpO2 estimation, enabling low cost non invasive monitoring in neonatal intensive care.

eess.IV

Synthetic Fingerprints for Children Under Four: Generation and Biometric Evaluation

Fingerprint recognition in children under four is of interest for longitudinal identity applications, but research in this age range is constrained by the limited availability and sensitivity of real fingerprint data. Synthetic data may provide a useful complementary resource if generated samples are carefully evaluated for biometric quality, similarity to the real training data, and identity diversity. This paper presents an evaluation and selection protocol for synthetic fingerprints generated from a small pediatric dataset. The protocol was applied to 32,000 candidates produced by an age-conditioned generator fine-tuned with 205 fingerprints from nine children. Candidates were evaluated using NFIQ 2, NBIS minutiae extrac-tion and matching, fingerprint-pattern classification, similarity to the complete real reference set, and pairwise similarity among retained synthetic samples. After candidate filtering and a final symmetric pairwise verification, 1,985 synthetic fingerprints remained. The youngest age group continued to produce retained samples within the sampling budget, whereas the oldest original age group produced 24 retained prints. A data-derived two-group age representation improved pattern-distribution agreement for the younger group. Repeated renderings of fixed synthetic iden-tities produced minutiae-based mated scores comparable to the real mated scores, although a DINOv2 texture representation showed substantially greater within-generator similarity. The results indicate that synthetic pediatric fingerprints can support controlled research use, but their evaluation should include both real-to-synthetic similarity and synthetic-to-synthetic diversity, and conclusions should remain specific to the matchers and measurements used.

eess.IV

Adaptive Color Grading

Independent control of tonescale regions (e.g., shadows, highlights) is essential for painters, photographers and cinematographers to bring 2D images to life. In image manipulation software this is most directly addressed by color grading modules, which use intensity thresholds to segment distinct illumination regions for local manipulation. In this work we develop an open source color grading tool and use it to annotate a large dataset of video frames with tonescale region thresholds. Using these thresholds we conduct modeling experiments with strategies based on both practitioners' conventional wisdom and machine learning. Results show that K-nearest neighbors is an effective prediction strategy, outperforming state-of-the-art end-to-end methods for image enhancement. This outcome demonstrates the benefit of focusing on a compact set of core parameters when modeling creative stylization processes. Our adaptive color grading interface and data are available at https://github.com/SamsungLabs/adaptive-color-grading.

eess.IV