Search arXivSearch

arXiv · 2009.11008

An Attention Mechanism with Multiple Knowledge Sources for COVID-19 Detection from CT Images

Abstract

Until now, Coronavirus SARS-CoV-2 has caused more than 850,000 deaths and infected more than 27 million individuals in over 120 countries. Besides principal polymerase chain reaction (PCR) tests, automatically identifying positive samples based on computed tomography (CT) scans can present a promising option in the early diagnosis of COVID-19. Recently, there have been increasing efforts to utilize deep networks for COVID-19 diagnosis based on CT scans. While these approaches mostly focus on introducing novel architectures, transfer learning techniques, or construction large scale data, we propose a novel strategy to improve the performance of several baselines by leveraging multiple useful information sources relevant to doctors' judgments. Specifically, infected regions and heat maps extracted from learned networks are integrated with the global image via an attention mechanism during the learning process. This procedure not only makes our system more robust to noise but also guides the network focusing on local lesion areas. Extensive experiments illustrate the superior performance of our approach compared to recent baselines. Furthermore, our learned network guidance presents an explainable feature to doctors as we can understand the connection between input and output in a grey-box model.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Duy M. H. Nguyen, Duy M. Nguyen, Huong Vu, Binh T. Nguyen, Fabrizio Nunnari, Daniel Sonntag. 2020-12-01. An Attention Mechanism with Multiple Knowledge Sources for COVID-19 Detection from CT Images. https://arxiv.org/abs/2009.11008

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

VideoPulse: Neonatal heart rate and peripheral capillary oxygen saturation (SpO2) estimation from contact free video

Remote photoplethysmography (rPPG) enables contact free monitoring of vital signs and is especially valuable for neonates, since conventional methods often require sustained skin contact with adhesive probes that can irritate fragile skin and increase infection control burden. We present VideoPulse, a neonatal dataset and an end to end pipeline that estimates neonatal heart rate and peripheral capillary oxygen saturation (SpO2) from facial video. VideoPulse contains 157 recordings totaling 2.6 hours from 52 neonates with diverse face orientations. Our pipeline performs face alignment and artifact aware supervision using denoised pulse oximeter signals, then applies 3D CNN backbones for heart rate and SpO2 regression with label distribution smoothing and weighted regression for SpO2. Predictions are produced in 2 second windows. On the NBHR neonatal dataset, we obtain heart rate MAE 2.97 bpm using 2 second windows (2.80 bpm at 6 second windows) and SpO2 MAE 1.69 percent. Under cross dataset evaluation, the NBHR trained heart rate model attains 5.34 bpm MAE on VideoPulse, and fine tuning an NBHR pretrained SpO2 model on VideoPulse yields MAE 1.68 percent. These results indicate that short unaligned neonatal video segments can support accurate heart rate and SpO2 estimation, enabling low cost non invasive monitoring in neonatal intensive care.

eess.IV

Synthetic Fingerprints for Children Under Four: Generation and Biometric Evaluation

Fingerprint recognition in children under four is of interest for longitudinal identity applications, but research in this age range is constrained by the limited availability and sensitivity of real fingerprint data. Synthetic data may provide a useful complementary resource if generated samples are carefully evaluated for biometric quality, similarity to the real training data, and identity diversity. This paper presents an evaluation and selection protocol for synthetic fingerprints generated from a small pediatric dataset. The protocol was applied to 32,000 candidates produced by an age-conditioned generator fine-tuned with 205 fingerprints from nine children. Candidates were evaluated using NFIQ 2, NBIS minutiae extrac-tion and matching, fingerprint-pattern classification, similarity to the complete real reference set, and pairwise similarity among retained synthetic samples. After candidate filtering and a final symmetric pairwise verification, 1,985 synthetic fingerprints remained. The youngest age group continued to produce retained samples within the sampling budget, whereas the oldest original age group produced 24 retained prints. A data-derived two-group age representation improved pattern-distribution agreement for the younger group. Repeated renderings of fixed synthetic iden-tities produced minutiae-based mated scores comparable to the real mated scores, although a DINOv2 texture representation showed substantially greater within-generator similarity. The results indicate that synthetic pediatric fingerprints can support controlled research use, but their evaluation should include both real-to-synthetic similarity and synthetic-to-synthetic diversity, and conclusions should remain specific to the matchers and measurements used.

eess.IV

Adaptive Color Grading

Independent control of tonescale regions (e.g., shadows, highlights) is essential for painters, photographers and cinematographers to bring 2D images to life. In image manipulation software this is most directly addressed by color grading modules, which use intensity thresholds to segment distinct illumination regions for local manipulation. In this work we develop an open source color grading tool and use it to annotate a large dataset of video frames with tonescale region thresholds. Using these thresholds we conduct modeling experiments with strategies based on both practitioners' conventional wisdom and machine learning. Results show that K-nearest neighbors is an effective prediction strategy, outperforming state-of-the-art end-to-end methods for image enhancement. This outcome demonstrates the benefit of focusing on a compact set of core parameters when modeling creative stylization processes. Our adaptive color grading interface and data are available at https://github.com/SamsungLabs/adaptive-color-grading.

eess.IV