Search arXivSearch

arXiv · 2101.00762

On the quantum mechanical potential of mean force. II. Constrained path integral molecular dynamics integrators

Abstract

Building on Paper I of this series, which introduced path integral Monte Carlo (PIMC) estimators for the derivative of the potential of mean force (PMF), we propose two path integral molecular dynamics (PIMD) integrators that can make use of these estimators. These integrators, c-OBABO and c-BAOAB, are based on the path integral Langevin equation (PILE) integrator, which has seen widespread success in PIMD applications, but they include support for holonomic constraints. When the reaction coordinate is the distance between two centers of mass, we find that several exact expressions are accessible: the Fixman correction, the position constraint Lagrange multiplier, and various derivatives with respect to the reaction coordinate. It is observed that c-BAOAB tends to have a smaller time step error than c-OBABO, which is consistent with previous studies on integrator step ordering in molecular dynamics with holonomic constraints and in PIMD. Further, we show that both the PMF of a water dimer and its derivative may be obtained from PIMD simulations using c-BAOAB, yielding results in agreement with the path integral umbrella sampling method previously used for this system.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Dmitri Iouchtchenko, Kevin P. Bishop, Pierre-Nicholas Roy. 2021-10-07. On the quantum mechanical potential of mean force. II. Constrained path integral molecular dynamics integrators. https://arxiv.org/abs/2101.00762

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Intrinsic Matching Frustration in Fluctuating Finite Systems

We formulate intrinsic matching frustration (IMF), a fluctuation-induced, kinetics-independent reduction in the mean capacity permitted by a prescribed matching rule. For complementary one-to-one matching, the instantaneous capacity is set by the minority population, so fluctuations produce a nonzero mean deficit even when the two populations are balanced on average. At finite size, this deficit depends on the full distribution of the population difference and is determined by its variance alone only in the Gaussian limit. Compartmentalization hides matching capacity by preventing cancellation between local imbalances of opposite sign. Fusion releases this hidden capacity monotonically under coarse graining, producing a measurable recovery of product yield following local reaction to completion.

physics.chem-ph

Phonon chirality as an additive control of CISS: a symmetry-protected law

Chirality-induced spin selectivity (CISS) is usually associated with molecular handedness. The possible contribution of chiral phonons is less established. We study a helical tight-binding model in which local phonon angular momentum modulates spin-dependent nearest-neighbor hopping. Fewest-switches surface hopping calculations give the transmitted spin polarization $\mathrm{SP}=aC+b\mathrm{PH}$. Here $C$ is the molecular chirality and $\mathrm{PH}$ is the phonon chirality. A mirror symmetry reverses $C$, $\mathrm{PH}$, and $\mathrm{SP}$ simultaneously. This symmetry excludes both a chirality-independent offset and a $C\cdot\mathrm{PH}$ term. The phonon contribution can therefore enhance, cancel, or reverse the molecular CISS signal.

physics.chem-ph

A fast physics-based matrix model for the impedance of a PEM fuel cell: Incorporating functionally graded catalyst layer and channel impedances

We extend a recent physics-based matrix model for calculating PEM fuel cell impedance (doi:10.1149/2754-2734/ad6ce8) to cases of low air flow stoichiometry and functionally graded cathode catalyst layers (CCLs). We demonstrate that the matrix model produces accurate spectra and is almost three orders of magnitude faster than a model based on the standard boundary-value problem solver. The physics-based matrix model can compete with equivalent circuit models for fitting experimental EIS spectra, particularly those measured from cells with functionally graded CCL.

physics.chem-ph