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arXiv · 2109.05005

Exploring the Potential of Parallel Biasing in Flat Histogram Methods

Shanghui Huang·Michael J. Quevillon·Ernesto C. Cortés-Morales·Jonathan K. Whitmer
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Abstract

Metadynamics, a member of the `flat histogram' class of advanced sampling algorithms, has been widely used in molecular simulations to drive the exploration of states separated by high free energy barriers and promote comprehensive sampling of free energy landscapes defined on collective variables (CVs) which characterize the state of the system. Typically, the methods encounter severe limitations when exploring large numbers of CVs. A recently proposed variant, parallel bias metadynamics (PBMetaD), promises to aid in exploring free energy landscapes along with multiple important collective variables by exchanging the $n$-dimensional free energy landscape required by standard methods for $n$ one-dimensional marginal free energy landscapes. In this study, we systematically examine how parallel biasing affects the convergence of free energy landscapes along with each variable relative to standard methods and the effectiveness of the parallel biasing strategy for addressing common bottlenecks in the use of advanced sampling to calculate free energies.

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Shanghui Huang, Michael J. Quevillon, Ernesto C. Cortés-Morales, Jonathan K. Whitmer. 2021-09-10. Exploring the Potential of Parallel Biasing in Flat Histogram Methods. https://arxiv.org/abs/2109.05005

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