Search arXivSearch

arXiv · 2205.04280

TGANet: Text-guided attention for improved polyp segmentation

Abstract

Colonoscopy is a gold standard procedure but is highly operator-dependent. Automated polyp segmentation, a precancerous precursor, can minimize missed rates and timely treatment of colon cancer at an early stage. Even though there are deep learning methods developed for this task, variability in polyp size can impact model training, thereby limiting it to the size attribute of the majority of samples in the training dataset that may provide sub-optimal results to differently sized polyps. In this work, we exploit size-related and polyp number-related features in the form of text attention during training. We introduce an auxiliary classification task to weight the text-based embedding that allows network to learn additional feature representations that can distinctly adapt to differently sized polyps and can adapt to cases with multiple polyps. Our experimental results demonstrate that these added text embeddings improve the overall performance of the model compared to state-of-the-art segmentation methods. We explore four different datasets and provide insights for size-specific improvements. Our proposed text-guided attention network (TGANet) can generalize well to variable-sized polyps in different datasets.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Nikhil Kumar Tomar, Debesh Jha, Ulas Bagci, Sharib Ali. 2022-05-09. TGANet: Text-guided attention for improved polyp segmentation. https://arxiv.org/abs/2205.04280

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Performance of Machine Learning Classification in Sonomammogram Images using BI-RADS

This research aims to investigate the classification accuracy of various state-of-the-art image classification models across different categories of breast ultrasound images, as defined by the Breast Imaging Reporting and Data System (BI-RADS). To achieve this, we used 2,945 sonomammogram images for training and 936 images for validation, with the source cohort reported as comprising 1,540 patients. In order to conduct a thorough analysis, we employed six advanced classification architecture families, including VGG19 \cite{simonyan2014very}, ResNet50 \cite{he2016deep}, GoogleNet \cite{szegedy2015going}, ConvNeXt \cite{liu2022convnet}, EfficientNet \cite{tan2019efficientnet}, and Vision Transformers (ViT) \cite{dosovitskiy2020image}, instead of traditional machine learning models. We evaluate models in three different settings: full fine-tuning, linear evaluation and training from scratch. Our findings demonstrate the effectiveness and capability of our Computer-Aided Diagnosis (CAD) system, with a remarkable accuracy of 76.39\% and an F1 score of 67.94\% in the full fine-tuning setting. Our findings indicate the potential for enhanced diagnostic accuracy in the field of breast imaging, providing a solid foundation for future endeavors aiming to improve the precision and reliability of CAD systems in medical imaging.

eess.IV

Compression Hurts, Pooling Helps: Information Loss in Rayleigh-Scale Estimation from B-Mode Ultrasound

Clinical B-mode images are widely available as potential data sources for quantitative ultrasound (QUS) analysis for tissue characterization. However, standard clinical ultrasound devices apply unknown log-compression to RF envelope data before display and storage. Previous work has demonstrated estimation of the underlying RF envelope statistics in the presence of an unknown compression law. Using Fisher information analysis, we show that finite-offset log compression causes severe information loss when estimating the Rayleigh scale $σ$, which controls diffuse speckle. For a single image window, unknown compression raises the minimum achievable variance for unbiased estimation of $σ$ by a compression-independent factor of approximately $\FisherMinInflation$. When $M$ equal-sized windows share the same unknown compression settings, the excess variance decays as $1/M$; even in the most favorable regime, reducing the variance inflation factor below $1.1$ requires $\FisherBestCaseWindows$ windows. Our analysis treats the contrast parameter $a$ as unknown and the boundary offset $b$ as known; estimating $b$ experimentally shows even larger variance. We validate this theory using synthetic estimation experiments and demonstrate RF-scale recovery on real RF-envelope windows from the OASBUD dataset. Together, these results clarify the limitations of using routine B-mode images for QUS.

eess.IV

The segmentation ceiling: why explicit left-ventricular masks do not improve learned ejection-fraction regression

Accurate estimation of left ventricular ejection fraction (EF) from echocardiography is central to cardiovascular care, and deep learning enables automated EF prediction from echocardiographic video. Because EF is clinically derived from left-ventricular (LV) volumes, a widely held intuition is that explicit LV segmentation should improve prediction. We introduce a quantitative criterion, the segmentation ceiling, that makes this testable: from EF as a normalized difference of end-diastolic and end-systolic volumes, we derive in closed form how per-frame segmentation area error propagates into EF error, and thus the accuracy a mask must reach before it can improve on direct regression. Using EchoNet-Dynamic, a UniFormer-S backbone, and the empirically measured within-patient error correlation, the criterion places the break-even near 10% per-frame area error, whereas a representative segmenter operates at roughly 14%, above the ceiling. Consistent with this, four strategies for injecting segmentation or area information (a predicted-mask channel, end-diastolic/end-systolic clip sampling, and per-bin and amplitude area-consistency objectives) fail to beat a raw-video baseline; ground-truth masks help only through label leakage. Input representation thus not being the limit, we identify generalization as the practical lever: weight averaging with strong augmentation attains a test R^2 of 0.806 (MAE 4.08) under a matched dense-clip protocol, comparable to an R(2+1)D baseline (0.811) while tightening the validation-to-test gap. Finally, a heteroscedastic beta-NLL formulation yields informative, well-calibrated per-prediction uncertainty, larger for clinically harder low-EF cases, where Monte-Carlo dropout does not. The segmentation ceiling gives a concrete design criterion for when mask-guided EF estimation is worthwhile, plus a simple, uncertainty-aware recipe for EF regression.

eess.IV