CloudBrain-MRS: An Intelligent Cloud Computing Platform for in vivo Magnetic Resonance Spectroscopy Preprocessing, Quantification, and Analysis

Xiaodie Chen; Jiayu Li; Dicheng Chen; Yirong Zhou; Zhangren Tu; Meijin Lin; Taishan Kang; Jianzhong Lin; Tao Gong; Liuhong Zhu; Jianjun Zhou; Lin Ou-yang; Jiefeng Guo; Jiyang Dong; Di Guo; Xiaobo Qu

arXiv · 2306.11021

CloudBrain-MRS: An Intelligent Cloud Computing Platform for in vivo Magnetic Resonance Spectroscopy Preprocessing, Quantification, and Analysis

Xiaodie Chen·Jiayu Li·Dicheng Chen·Yirong Zhou·Zhangren Tu·Meijin Lin·Taishan Kang·Jianzhong Lin·Tao Gong·Liuhong Zhu·Jianjun Zhou·Lin Ou-yang·Jiefeng Guo·Jiyang Dong·Di Guo·Xiaobo Qu

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Abstract

Magnetic resonance spectroscopy (MRS) is an important clinical imaging method for diagnosis of diseases. MRS spectrum is used to observe the signal intensity of metabolites or further infer their concentrations. Although the magnetic resonance vendors commonly provide basic functions of spectra plots and metabolite quantification, the widespread clinical research of MRS is still limited due to the lack of easy-to-use processing software or platform. To address this issue, we have developed CloudBrain-MRS, a cloud-based online platform that provides powerful hardware and advanced algorithms. The platform can be accessed simply through a web browser, without the need of any program installation on the user side. CloudBrain-MRS also integrates the classic LCModel and advanced artificial intelligence algorithms and supports batch preprocessing, quantification, and analysis of MRS data from different vendors. Additionally, the platform offers useful functions: 1) Automatically statistical analysis to find biomarkers for diseases; 2) Consistency verification between the classic and artificial intelligence quantification algorithms; 3) Colorful three-dimensional visualization for easy observation of individual metabolite spectrum. Last, both healthy and mild cognitive impairment patient data are used to demonstrate the functions of the platform. To the best of our knowledge, this is the first cloud computing platform for in vivo MRS with artificial intelligence processing. We have shared our cloud platform at MRSHub, providing free access and service for two years. Please visit https://mrshub.org/software_all/#CloudBrain-MRS or https://csrc.xmu.edu.cn/CloudBrain.html.

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BibTeX RIS

Xiaodie Chen, Jiayu Li, Dicheng Chen, Yirong Zhou, Zhangren Tu, Meijin Lin, Taishan Kang, Jianzhong Lin, Tao Gong, Liuhong Zhu, Jianjun Zhou, Lin Ou-yang, Jiefeng Guo, Jiyang Dong, Di Guo, Xiaobo Qu. 2023-09-06. CloudBrain-MRS: An Intelligent Cloud Computing Platform for in vivo Magnetic Resonance Spectroscopy Preprocessing, Quantification, and Analysis. https://arxiv.org/abs/2306.11021

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