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arXiv · 2306.11547

Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events

Matthew B. A. McDermott·Bret Nestor·Peniel Argaw·Isaac Kohane
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Abstract

Generative, pre-trained transformers (GPTs, a.k.a. "Foundation Models") have reshaped natural language processing (NLP) through their versatility in diverse downstream tasks. However, their potential extends far beyond NLP. This paper provides a software utility to help realize this potential, extending the applicability of GPTs to continuous-time sequences of complex events with internal dependencies, such as medical record datasets. Despite their potential, the adoption of foundation models in these domains has been hampered by the lack of suitable tools for model construction and evaluation. To bridge this gap, we introduce Event Stream GPT (ESGPT), an open-source library designed to streamline the end-to-end process for building GPTs for continuous-time event sequences. ESGPT allows users to (1) build flexible, foundation-model scale input datasets by specifying only a minimal configuration file, (2) leverage a Hugging Face compatible modeling API for GPTs over this modality that incorporates intra-event causal dependency structures and autoregressive generation capabilities, and (3) evaluate models via standardized processes that can assess few and even zero-shot performance of pre-trained models on user-specified fine-tuning tasks.

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Matthew B. A. McDermott, Bret Nestor, Peniel Argaw, Isaac Kohane. 2023-06-20. Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events. https://arxiv.org/abs/2306.11547

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