TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance

Yuqian Chen; Leo R. Zekelman; Chaoyi Zhang; Tengfei Xue; Yang Song; Nikos Makris; Yogesh Rathi; Alexandra J. Golby; Weidong Cai; Fan Zhang; Lauren J. O'Donnell

arXiv · 2307.03982

TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance

Yuqian Chen·Leo R. Zekelman·Chaoyi Zhang·Tengfei Xue·Yang Song·Nikos Makris·Yogesh Rathi·Alexandra J. Golby·Weidong Cai·Fan Zhang·Lauren J. O'Donnell

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Abstract

We propose a geometric deep-learning-based framework, TractGeoNet, for performing regression using diffusion magnetic resonance imaging (dMRI) tractography and associated pointwise tissue microstructure measurements. By employing a point cloud representation, TractGeoNet can directly utilize pointwise tissue microstructure and positional information from all points within a fiber tract. To improve regression performance, we propose a novel loss function, the Paired-Siamese Regression loss, which encourages the model to focus on accurately predicting the relative differences between regression label scores rather than just their absolute values. In addition, we propose a Critical Region Localization algorithm to identify highly predictive anatomical regions within the white matter fiber tracts for the regression task. We evaluate the effectiveness of the proposed method by predicting individual performance on two neuropsychological assessments of language using a dataset of 20 association white matter fiber tracts from 806 subjects from the Human Connectome Project. The results demonstrate superior prediction performance of TractGeoNet compared to several popular regression models. Of the twenty tracts studied, we find that the left arcuate fasciculus tract is the most highly predictive of the two studied language performance assessments. The localized critical regions are widespread and distributed across both hemispheres and all cerebral lobes, including areas of the brain considered important for language function such as superior and anterior temporal regions, pars opercularis, and precentral gyrus. Overall, TractGeoNet demonstrates the potential of geometric deep learning to enhance the study of the brain's white matter fiber tracts and to relate their structure to human traits such as language performance.

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Yuqian Chen, Leo R. Zekelman, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Fan Zhang, Lauren J. O'Donnell. 2023-07-08. TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance. https://arxiv.org/abs/2307.03982

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