Low-latency Visual Previews of Large Synchrotron Micro-CT Datasets

Nicholas Tan Jerome; Suren Chilingaryan; Thomas van de Kamp; Andreas Kopmann

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arXiv · 2311.15038

Low-latency Visual Previews of Large Synchrotron Micro-CT Datasets

Nicholas Tan Jerome·Suren Chilingaryan·Thomas van de Kamp·Andreas Kopmann

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Abstract

The unprecedented rate at which synchrotron radiation facilities are producing micro-computed (micro-CT) datasets has resulted in an overwhelming amount of data that scientists struggle to browse and interact with in real-time. Thousands of arthropods are scanned into micro-CT within the NOVA project, producing a large collection of gigabyte-sized datasets. In this work, we present methods to reduce the size of this data, scaling it from gigabytes to megabytes, enabling the micro-CT dataset to be delivered in real-time. In addition, arthropods can be identified by scientists even after implementing data reduction methodologies. Our initial step is to devise three distinct visual previews that comply with the best practices of data exploration. Subsequently, each visual preview warrants its own design consideration, thereby necessitating an individual data processing pipeline for each. We aim to present data reduction algorithms applied across the data processing pipelines. Particularly, we reduce size by using the multi-resolution slicemaps, the server-side rendering, and the histogram filtering approaches. In the evaluation, we examine the disparities of each method to identify the most favorable arrangement for our operation, which can then be adjusted for other experiments that have comparable necessities. Our demonstration proved that reducing the dataset size to the megabyte range is achievable without compromising the arthropod's geometry information.

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BibTeX RIS

Nicholas Tan Jerome, Suren Chilingaryan, Thomas van de Kamp, Andreas Kopmann. 2023-11-25. Low-latency Visual Previews of Large Synchrotron Micro-CT Datasets. https://arxiv.org/abs/2311.15038

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