Search arXiv⌕ Search
Home/Archive/arXiv

arXiv · 2407.16353

Sizey: Memory-Efficient Execution of Scientific Workflow Tasks

Jonathan Bader·Fabian Skalski·Fabian Lehmann·Dominik Scheinert·Jonathan Will·Lauritz Thamsen·Odej Kao
View original source ↗Read source document ↗Export metadata ↓

Abstract

As the amount of available data continues to grow in fields as diverse as bioinformatics, physics, and remote sensing, the importance of scientific workflows in the design and implementation of reproducible data analysis pipelines increases. When developing workflows, resource requirements must be defined for each type of task in the workflow. Typically, task types vary widely in their computational demands because they are simply wrappers for arbitrary black-box analysis tools. Furthermore, the resource consumption for the same task type can vary considerably as well due to different inputs. Since underestimating memory resources leads to bottlenecks and task failures, workflow developers tend to overestimate memory resources. However, overprovisioning of memory wastes resources and limits cluster throughput. Addressing this problem, we propose Sizey, a novel online memory prediction method for workflow tasks. During workflow execution, Sizey simultaneously trains multiple machine learning models and then dynamically selects the best model for each workflow task. To evaluate the quality of the model, we introduce a novel resource allocation quality (RAQ) score based on memory prediction accuracy and efficiency. Sizey's prediction models are retrained and re-evaluated online during workflow execution, continuously incorporating metrics from completed tasks. Our evaluation with a prototype implementation of Sizey uses metrics from six real-world scientific workflows from the popular nf-core framework and shows a median reduction in memory waste over time of 24.68% compared to the respective best-performing state-of-the-art baseline.

Explore related subjects

cs.DC

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Jonathan Bader, Fabian Skalski, Fabian Lehmann, Dominik Scheinert, Jonathan Will, Lauritz Thamsen, Odej Kao. 2025-02-10. Sizey: Memory-Efficient Execution of Scientific Workflow Tasks. https://doi.org/10.1109/cluster59578.2024.00039

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Reforge: Low-Latency Distributed GNN Serving with Selective Embedding Recomputation

Graph Neural Networks (GNNs) have been widely adopted for their ability to compute expressive node representations in graph datasets. However, serving GNNs on large graphs is challenging due to the high communication, computation, and memory overheads of constructing and executing computation graphs, which represent information flow across large neighborhoods. Existing approximation techniques in training can mitigate the overheads but, in serving, still lead to high latency and/or accuracy loss. To this end, we propose Reforge, a system that enables low-latency GNN serving for large graphs with minimal accuracy loss through two key ideas. First, Reforge employs selective recomputation of precomputed embeddings, which allows for reusing precomputed computation subgraphs while selectively recomputing a small fraction to minimize accuracy loss. Second, we develop computation graph parallelism, which reduces communication overhead by parallelizing the creation and execution of computation graphs across machines. Our evaluation with large graph datasets and GNN models shows that Reforge significantly outperforms state-of-the-art techniques.

cs.DC↗
arXiv2026

Agentic AI Workload Characteristics

Agentic AI shifts LLM serving from isolated prompt-generation requests to stateful, multi-turn executions that repeatedly invoke the model, call tools, and grow context over time. This paper characterizes ReAct-style agents from both the LLM-serving and tool-execution perspectives using an end-to-end tracing infrastructure across reasoning and non-reasoning Gemma and Qwen configurations on five agentic benchmarks. Our study shows that agentic workloads are not simply long-prompt workloads: with effective context caching, most input tokens are reused across turns, making execution decode-dominated while increasing dependence on long-lived KV-cache state. We also find that tool use has a clear temporal structure, with agents shifting from read/explore behavior early in execution to execute/write behavior later. These results show that efficient agentic serving must jointly manage repeated model re-entry, persistent context state, and workload-dependent tool behavior.

cs.DC↗
arXiv2026

Byzantine Causal Reliable Broadcast (BCRB) with Constant-Size Message Metadata

Asynchronous Byzantine Reliable Broadcast (BRB) is a fundamental primitive that guarantees agreement and validity in distributed systems subject to Byzantine faults, but it lacks ordering guarantees. In this paper, we address Byzantine Causal Reliable Broadcast (BCRB), which builds on BRB to enforce causal message ordering. We present a novel BCRB protocol that decouples causal ordering from the BRB layer, achieving constant-size $\mathcal{O}(1)$ message metadata overhead and $\mathcal{O}(n^2)$ communication word complexity as against $\mathcal{O}(n^3)$ communication word complexity of existing protocols; here $n$ is the number of processes. We present two variants of our protocol: a cryptographic version using a threshold encryption scheme and sequence gating, and its non-cryptographic version. In the cryptographic version, senders broadcast ciphertexts immediately, and decryption shares are piggybacked on out-of-band ACKs, preventing early decryption and front-running. In both versions, causal safety is achieved probabilistically. We evaluate the probability of causal safety violations using a random variable path analysis under independent exponential link delay distributions. We show that both variants satisfy liveness and the probability of weak safety violation is bounded by $\mathcal{O}(f^{-3}\cdot\ln^3 f)$, where $f$ is the upper bound on the number of Byzantine processes, and $f < n/3$ and $f=\mathcal{O}(n)$. Further, for the crypto version, we show that the probability of strong safety violation is bounded by $\mathcal{O}(f^{-1} \cdot \ln^2 f)$. We also show how to modify our two protocols to guarantee 100\% weak safety keeping $\mathcal{O}(1)$ message space overhead but with $\mathcal{O}(n^3)$ messages and $\mathcal{O}(n^3)$ communication word complexity.

cs.DC↗