Search arXivSearch

arXiv · 2409.12761

Integrating systematic surveys with historical data to model the distribution of Ornithodoros turicata americanus, a vector of epidemiological concern in North America

Abstract

Globally, vector-borne diseases are increasing in distribution and frequency, affecting humans, domestic animals and livestock, and wildlife. Science-based management and prevention of these diseases requires a sound understanding of the distribution and environmental requirements of the vectors and hosts involved in disease transmission. Integrated Species Distribution Models (ISDM) account for diverse data types through hierarchical modeling and represent a significant advancement in species distribution modeling that have not yet been leveraged in disease ecology. We used this approach, as implemented in the recently developed R package RISDM, to assess the distribution of the soft tick subspecies Ornithodoros turicata americanus. We created an ISDM for O. t. americanus, using systematically collected field data and historical records of this tick species in the southeastern US, to predict its distribution and assess potential correlations with environmental variables. Given the novelty of this method, we compared the results to a conventional Maxent SDM and validated the results through data partitioning using true skills statistics (TSS), sensitivity, and area under the ROC curve (AUC) metrics. We found that a combination of climatic variables describing seasonality and temperature extremes, along with the amount of sand in the soil, determined the predicted intensity of occurrence of this tick species. When projected in geographic space, this distribution model predicted 62% of Florida as suitable habitat for this tick species. The ISDM presented a higher TSS and AUC than the Maxent conventional model, while sensitivity was similar between both models. Our case example shows the utility of ISDMs in disease ecology studies and highlights the broad range of geographic suitability for this important disease vector.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Sebastian Botero-Canola, Carson Torhorst, Nicholas Canino, Lorenza Beati, Kathleen C. O Hara, Angela M. James, Samantha M. Wisely. 2024-09-19. Integrating systematic surveys with historical data to model the distribution of Ornithodoros turicata americanus, a vector of epidemiological concern in North America. https://arxiv.org/abs/2409.12761

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Phase transitions in microbial lineage trees

Microbial populations exhibit high cell-to-cell variability, which fundamentally shapes population behavior. A striking consequence is the existence of phase transitions, where small genetic or environmental changes trigger abrupt shifts in population dynamics. While biological phase transitions have often been proposed, connecting observed behavior to the underlying physics has remained challenging. We combine population genetics with statistical physics to show how phase transitions arise naturally in microbial populations. We highlight the existence of a first-order transition in a model of bacterial plasmid engineering and find a strict lower bound on the number of plasmids that can be stably maintained in a population.

q-bio.PE

Phylogenetic Inference and the Stickiness of Fréchet Means, via Precise Asymptotics of an Embedded Random Walk

A well-known phenomenon in statistical analyses of populations of phylogenetic trees in the Billera-Holmes-Vogtmann space is that the topology of the Fréchet mean tree can contain multifurcations (i.e., internal nodes with more than two children), which raises the practical question of whether this reflects a population-level branching structure (hard polytomy) or merely sampling variability in the data (soft polytomy). This is an instance of the more general phenomenon of "stickiness" in non-Euclidean statistics, whereby the sample Fréchet mean in certain non-positively curved stratified spaces becomes permanently trapped in a lower-dimensional stratum. In this work, we identify a particular multidimensional random walk embedded within the Fréchet mean process, and we show that the time at which stickiness occurs is determined by the largest last-passage time above zero of the coordinates of this random walk. Using this representation, we develop a fully nonparametric procedure for estimating the probability that trifurcations in a sample Fréchet mean tree will bifurcate at some future time if more observations are collected. Lastly, we apply our methodology to a problem in phylogenetics where we consider whether an observed trifurcation in the species tree of primates, glires, and tree shrews is genuinely trifurcated at the population level.

q-bio.PE

Coexistence coalitions in propagule disperser quasi-communities

Many natural ecosystems harbor large numbers of coexisting species competing for far fewer distinct resources, in apparent defiance of the competitive exclusion principle. Various mechanisms have been proposed to explain this apparent paradox, often pertaining to organisms with a two-stage sessile--propagule life cycle. Here we develop a stochastic model class for such propagule disperser communities that combines competition--colonization trade-offs, spatial heterogeneity, demographic stochasticity, as well as inherited trait variation, and recover several classical models as special or limiting cases. Using bifurcation analysis, we classify equilibrium coalitions near the extinction threshold and give sufficient conditions for their realization by macroscopic equilibria away from the threshold, bypassing the costly numerical computation of the actual equilibrium states. Illustrative examples examine the resulting trait distributions and coalition patterns, demonstrating the interactive effects of different coexistence mechanisms.

q-bio.PE