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arXiv · 2409.16888

Tailored 3D microphantoms: an essential tool for quantitative phase tomography analysis of organoids

Michal Ziemczonok·Sylvia Desissaire·Jeremy Neri·Arkadiusz Kus·Lionel Herve·Cecile Fiche·Guillaume Godefroy·Marie Fackeure·Sery Damien·Wojciech Krauze·Kiran Padmanabhan·Chiara Paviolo·Malgorzata Kujawinska
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Abstract

We present a novel approach for benchmarking and validating quantitative phase tomography (QPT) systems using three-dimensional microphantoms. These microphantoms, crafted from biological and imaging data, replicate the optical and structural properties of multicellular biological samples. Their fabrication featuring refractive index modulation at sub-micrometer details is enabled by two-photon polymerization. We showcase the effectiveness of our technique via a round-robin test of healthy and tumoral liver organoid phantoms across three different QPT systems. This test reveals sample- and system-dependent errors in measuring dry mass and morphology. Tailored microphantoms establish the gold standard for the optimization of hardware setups, reconstruction strategies and error assessment, paving the way for novel non-invasive, label-free measurements of 3D biological samples.

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Michal Ziemczonok, Sylvia Desissaire, Jeremy Neri, Arkadiusz Kus, Lionel Herve, Cecile Fiche, Guillaume Godefroy, Marie Fackeure, Sery Damien, Wojciech Krauze, Kiran Padmanabhan, Chiara Paviolo, Malgorzata Kujawinska. 2024-09-25. Tailored 3D microphantoms: an essential tool for quantitative phase tomography analysis of organoids. https://doi.org/10.1016/j.bbe.2025.03.003

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