Search arXivSearch

arXiv · 2411.06704

Accelerating Low-field MRI: From Compressed Sensing to Deep Learning Reconstruction with CNNs and Transformers

Abstract

Portable, low-field Magnetic Resonance Imaging (MRI) scanners are increasingly being deployed in clinical settings. However, key barriers to their widespread use include low signal-to-noise ratio (SNR), generally low image quality, and long scan durations. Hence, methods for accelerating acquisition and boosting image quality are critically important to enable clinically actionable, high-quality imaging in these systems. Despite the role that compressed sensing (CS) and deep learning (DL)-based methods have played in improving image quality for high-field MRI, their adoption for low-field imaging is still in its infancy, and it remains unclear how robust these methods are in low-SNR regimes. Here, we propose, investigate, and compare four reconstruction approaches: (i) L1-wavelet CS; (ii) a data-driven network; (iii) an unrolled network; and (iv) a Swin Transformer Cascade. We evaluate their performance across a range of SNR values using publicly available datasets and ultra-low field (6.5 mT) MRI data. Our results show that the unrolled network and Swin Transformer cascade outperform CS and data-driven models. While transformer-based models achieve the highest performance at high SNR, unrolled convolution-based networks are more robust in ultra-low SNR settings and often outperform transformers, indicating that simpler DL architectures may be better suited to low-field MRI. This work highlights both the potential and limitations of advanced reconstruction techniques in low-field MRI and pinpoints effective DL strategies for addressing SNR challenges.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Efrat Shimron, Shanshan Shan, James Grover, Neha Koonjoo, Sheng Shen, Thomas Boele, Annabel J. Sorby-Adams, John E. Kirsch, Matthew S. Rosen, David E. J. Waddington. 2025-09-15. Accelerating Low-field MRI: From Compressed Sensing to Deep Learning Reconstruction with CNNs and Transformers. https://arxiv.org/abs/2411.06704

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Prediction of biological radiation effects based on ionization clusters (nanodosimetry)

This article reviews approaches that link the formation of ionization clusters in nanometric volumes to radiobiological effectiveness. The corresponding models were developed as the field of nanodosimetry developed. Some address early biological radiation effects, such as DNA damage, while most aim to predict cell survival or inactivation. The models also differ in the nanodosimetric quantities considered, with many based on the probability distribution of ionization cluster formation in a single target. Some models account for the synergistic effects of pairs of ionization clusters formed in different targets. Several models feature macroscopic aggregation frameworks based on particle fluence, which are proposed for use in radiotherapy treatment planning, particularly in ion-beam radiotherapy. The models are presented here using harmonized terminology and notation for nanodosimetric quantities. An extension of the conceptual framework of nanodosimetry is also discussed. This extension transitions from a target-centered description to a track-centered description. It also introduces nanodosimetry-based analogs of dosimetric concepts, such as dose and linear energy transfer. This paper traces and summarizes the historical development of nanodosimetry-based biological effect models and discusses conceptual aspects of the models to reveal their underlying assumptions and the extent to which they are mechanistic or merely elucidate correlations. Eventually, an attempt is made to identify the key open questions in this field that still need to be addressed.

physics.med-ph

Contextual Cellular Growth (ConCeG) of neural cells for realistic grey matter tissue generation for diffusion MRI simulations

Accurate interpretation of diffusion magnetic resonance imaging (dMRI) signals in grey matter (GM) remains challenging due to the complex, heterogeneous, and densely packed cellular environment. Numerical phantoms provide a controlled framework for investigating the relationship between microstructure and diffusion signals, yet existing approaches often lack the morphological realism and multi-cellular organisation required to faithfully represent GM tissue. In this work, we introduce Contextual Cellular Growth (ConCeG), a generative framework for creating individual cells or constructing dense, three-dimensional, multi-cellular GM substrates informed by real neuronal and glial morphologies. The method combines topological neuron synthesis with a spatially constrained growth network, allowing for the controlled generation of heterogeneous cellular environments with realistic intra- and extracellular compartments. Synthetic cells are generated using morphological and topological characteristics derived from biological reconstructions. We validate the framework through comparisons of structural features with real cellular data, demonstrating strong agreement in branch order, length, angle, and tortuosity distributions. Power spectrum analysis further shows that both intracellular compartments reproduce the spatial correlations observed in biological tissue. Together, these results show ConCeG provides a biologically grounded framework for generating grey matter substrates suitable for large scale diffusion MRI simulation.

physics.med-ph

Magnetic Field of Firing Neuron in Humans: Measurable by Quantum Sensing MRI?

Firing neurons generate action potentials that propagate along axons to transmit signals supporting cognitive functions. These electrical currents generate magnetic fields, yet direct detection of these neuronal magnetic fields by MRI remains elusive. This Mini Review investigates why this goal has been proven difficult to achieve and whether an emerging approach, quantum sensing MRI, can overcome the challenge.

physics.med-ph