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arXiv · 2411.15467

The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion

Yingke Ma·Xuetong Zhao·Yaokai Jia·Zhenxian Han·Caixia Yu·Zhuojing Fan·Zhang Zhang·Jingfa Xiao·Wenming Zhao·Yiming Bao·Meili Chen
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Abstract

The Genome Warehouse (GWH), accessible at https://ngdc.cncb.ac.cn/gwh, is an extensively utilized public repository dedicated to the deposition, management and sharing of genome assembly sequences, annotations, and metadata. This paper highlights noteworthy enhancements to the GWH since the 2021 version, emphasizing substantial advancements in web interfaces for data submission, database functionality updates, and resource integration. Key updates include the reannotation of released prokaryotic genomes, mirroring of genome resources from National Center for Biotechnology Information (NCBI) GenBank and RefSeq, integration of Poxviridae sequences, implementation of an online batch submission system, enhancements to the quality control system, advanced search capabilities, and the introduction of a controlled-access mechanism for human genome data. These improvements collectively augment the ease and security of data submission and access as well as genome data value, thereby fostering heightened convenience and utility for researchers in the genomic field.

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Yingke Ma, Xuetong Zhao, Yaokai Jia, Zhenxian Han, Caixia Yu, Zhuojing Fan, Zhang Zhang, Jingfa Xiao, Wenming Zhao, Yiming Bao, Meili Chen. 2024-11-23. The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion. https://arxiv.org/abs/2411.15467

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