Search arXiv⌕ Search
Home/Archive/arXiv

arXiv · 2411.16699

Bistability and chaos in the discrete two-gene Andrecut-Kauffman model

Mikołaj Rosman·Michał Palczewski·Paweł Pilarczyk·Agnieszka Bartłomiejczyk
View original source ↗Read source document ↗Export metadata ↓

Abstract

We conduct numerical analysis of the 2-dimensional discrete-time gene expression model originally introduced by Andrecut and Kauffman (Phys. Lett. A 367: 281-287, 2007). In contrast to the previous studies, we analyze the dynamics with different reaction rates $\alpha_1$ and $\alpha_2$ for each of the two genes under consideration. We explore bifurcation diagrams for the model with $\alpha_1$ varying in a wide range and $\alpha_2$ fixed. We detect chaotic dynamics by means of the positive maximum Lyapunov exponent and we scan through selected parameters to detect those combinations for which chaotic dynamics can be found in the model. Moreover, we find bistability in the model, that is, the existence of two disjoint attractors. Both situations are interesting from the point of view of applications, as they imply unpredictability of the dynamics encountered. Finally, we show some specific values of parameters of the model in which the two attractors are of different kind (a periodic orbit and a chaotic attractor) or of the same kind (two periodic orbits or two chaotic attractors).

Explore related subjects

nlin.CDmath.DS

Keep this discovery

BibTeXRIS

Mikołaj Rosman, Michał Palczewski, Paweł Pilarczyk, Agnieszka Bartłomiejczyk. 2024-11-10. Bistability and chaos in the discrete two-gene Andrecut-Kauffman model. https://doi.org/10.3934/dcdsb.2025028

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Linear Response Predicts Cusp-Pair Births in Networks with a Localized Cubic

Linear response is cheap to measure; the bistability boundaries it organizes are not. For a passive network with one localized cubic, the driving-point receptance $G$ fixes the period-one cusp set at fundamental-harmonic order: cusps lie on a fixed phase contour of $G$, a tangency of that contour under parameter variation creates a pair, and its curvature separates a gap opening from an isolated loop. For a two-mode absorber the linear prediction locates a benchmark birth coupling to $0.3\%$, and to $0.03\%$ once a third-harmonic correction of scale $|G(3\Omega)/G(\Omega)|$ is included.

nlin.CD↗
arXiv2026

Dynamics Creation through Neural Dynamical Transfer Learning

Data-driven machine learning has established a robust foundation for reconstructing nonlinear dynamical systems from observations, primarily for the purposes of forecasting and control. However, most existing efforts focus on recovering specific observed dynamics rather than the generative synthesis of new ones. Inspired by image fusion and style transfer, we introduce a neural network framework termed Neural Dynamical Transfer Learning (NDTL) to create new systems with prescribed dynamics from pairs of parent nonlinear dynamical systems. By computing fundamental dynamical signatures, including the intrinsic dimension, the Kaplan-Yorke dimension, the invariant measure statistics, and the Lyapunov spectrum, we demonstrate that NDTL preserves key features inherited from the parent models while simultaneously generating novel dynamics. Beyond these validation examples, NDTL induces a criterion for dynamics classification, creates stable oscillatory coexistence in the Hastings-Powell food chain model, produces interpretable epidemiological models, and provides a chaotic source for image encryption.

nlin.CD↗
arXiv2026

The Spectral Skeleton of Chaos: Koopman Wave Packets on Poincar\'e Sections

A Poincar\'e section replaces a flow by a return map, but for a chaotic system this map is usually known only from sampled crossings. We show that coarse transport can be read directly from Koopman spectral data, without fitting the map. Measure-preserving EDMD retains the isometric structure; riggedDMD then approximates spectral measures and constructs finite regularized wave packets. Packet phase supplies a finite-resolution transport coordinate; low modulus marks a singular skeleton where the phase becomes ill-conditioned. We demonstrate the idea on the R\"ossler system, a 32-mode Kuramoto--Sivashinsky Galerkin system, and the forced Duffing oscillator. The packets yield coarse symbolic models on sections ranging from an almost one-dimensional curve to a visibly thick set. Their graphs organize observed low-period orbits and guide targeted searches for others. In Duffing Regime~II, a seven-region rule accounts for $91\%$--$94\%$ of filtered one-step transitions, while failures in the lowest retained modulus decile occur at $5.08$--$5.20$ times the overall rate. The packets are not Koopman eigenfunctions, nor are the regions exact Markov partitions. Together these computations show how spectral information beyond isolated eigenpairs can expose chaotic transport directly from trajectories.

nlin.CD↗