Search arXivSearch

arXiv · 2503.21228

Value of risk-contact data from digital contact monitoring apps in infectious disease modeling

Abstract

In this paper, we present a simple method to integrate risk-contact data, obtained via digital contact monitoring (DCM) apps, in conventional compartmental transmission models. During the recent COVID-19 pandemic, many such data have been collected for the first time via newly developed DCM apps. However, it is unclear what the added value of these data is, unlike that of traditionally collected data via, e.g., surveys during non-epidemic times. The core idea behind our method is to express the number of infectious individuals as a function of the proportion of contacts that were with infected individuals and use this number as a starting point to initialize the remaining compartments of the model. As an important consequence, using our method, we can estimate key indicators such as the effective reproduction number using only two types of daily aggregated contact information, namely the average number of contacts and the average number of those contacts that were with an infected individual. We apply our method to the recent COVID-19 epidemic in the Netherlands, using self-reported data from the health surveillance app COVID RADAR and proximity-based data from the contact tracing app CoronaMelder. For both data sources, our corresponding estimates of the effective reproduction number agree both in time and magnitude with estimates based on other more detailed data sources such as daily numbers of cases and hospitalizations. This suggests that the use of DCM data in transmission models, regardless of the precise data type and for example via our method, offers a promising alternative for estimating the state of an epidemic, especially when more detailed data are not available.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Martijn H. H. Schoot Uiterkamp, Willian J. van Dijk, Hans Heesterbeek, Remco van der Hofstad, Jessica C. Kiefte-de Jong, Nelly Litvak. 2025-03-27. Value of risk-contact data from digital contact monitoring apps in infectious disease modeling. https://arxiv.org/abs/2503.21228

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Phase transitions in microbial lineage trees

Microbial populations exhibit high cell-to-cell variability, which fundamentally shapes population behavior. A striking consequence is the existence of phase transitions, where small genetic or environmental changes trigger abrupt shifts in population dynamics. While biological phase transitions have often been proposed, connecting observed behavior to the underlying physics has remained challenging. We combine population genetics with statistical physics to show how phase transitions arise naturally in microbial populations. We highlight the existence of a first-order transition in a model of bacterial plasmid engineering and find a strict lower bound on the number of plasmids that can be stably maintained in a population.

q-bio.PE

Phylogenetic Inference and the Stickiness of Fréchet Means, via Precise Asymptotics of an Embedded Random Walk

A well-known phenomenon in statistical analyses of populations of phylogenetic trees in the Billera-Holmes-Vogtmann space is that the topology of the Fréchet mean tree can contain multifurcations (i.e., internal nodes with more than two children), which raises the practical question of whether this reflects a population-level branching structure (hard polytomy) or merely sampling variability in the data (soft polytomy). This is an instance of the more general phenomenon of "stickiness" in non-Euclidean statistics, whereby the sample Fréchet mean in certain non-positively curved stratified spaces becomes permanently trapped in a lower-dimensional stratum. In this work, we identify a particular multidimensional random walk embedded within the Fréchet mean process, and we show that the time at which stickiness occurs is determined by the largest last-passage time above zero of the coordinates of this random walk. Using this representation, we develop a fully nonparametric procedure for estimating the probability that trifurcations in a sample Fréchet mean tree will bifurcate at some future time if more observations are collected. Lastly, we apply our methodology to a problem in phylogenetics where we consider whether an observed trifurcation in the species tree of primates, glires, and tree shrews is genuinely trifurcated at the population level.

q-bio.PE

Coexistence coalitions in propagule disperser quasi-communities

Many natural ecosystems harbor large numbers of coexisting species competing for far fewer distinct resources, in apparent defiance of the competitive exclusion principle. Various mechanisms have been proposed to explain this apparent paradox, often pertaining to organisms with a two-stage sessile--propagule life cycle. Here we develop a stochastic model class for such propagule disperser communities that combines competition--colonization trade-offs, spatial heterogeneity, demographic stochasticity, as well as inherited trait variation, and recover several classical models as special or limiting cases. Using bifurcation analysis, we classify equilibrium coalitions near the extinction threshold and give sufficient conditions for their realization by macroscopic equilibria away from the threshold, bypassing the costly numerical computation of the actual equilibrium states. Illustrative examples examine the resulting trait distributions and coalition patterns, demonstrating the interactive effects of different coexistence mechanisms.

q-bio.PE