A Bayesian Approach to Segmentation with Noisy Labels via Spatially Correlated Distributions

Abstract

In semantic segmentation, the accuracy of models heavily depends on the high-quality annotations. However, in many practical scenarios, such as medical imaging and remote sensing, obtaining true annotations is not straightforward and usually requires significant human labor. Relying on human labor often introduces annotation errors, including mislabeling, omissions, and inconsistency between annotators. In the case of remote sensing, differences in procurement time can lead to misaligned ground-truth annotations. These label errors are not independently distributed, and instead usually appear in spatially connected regions where adjacent pixels are more likely to share the same errors. To address these issues, we propose an approximate Bayesian estimation based on a probabilistic model that assumes training data include label errors, incorporating the tendency for these errors to occur with spatial correlations between adjacent pixels. However, Bayesian inference for such spatially correlated discrete variables is notoriously intractable. To overcome this fundamental challenge, we introduce a novel class of probabilistic models, which we term the ELBO-Computable Correlated Discrete Distribution (ECCD). By representing the discrete dependencies through a continuous latent Gaussian field with a Kac-Murdock-Szegö (KMS) structured covariance, our framework enables scalable and efficient variational inference for problems previously considered computationally prohibitive. Through experiments on multiple segmentation tasks, we confirm that leveraging the spatial correlation of label errors significantly improves performance. Notably, in specific tasks such as lung segmentation, the proposed method achieves performance comparable to training with clean labels under moderate noise levels. Code is available at https://github.com/pfnet-research/Bayesian_SpatialCorr.