Finding Many Overlapping Dense Subgraphs Using Triadic Cohorts

Abstract

Graphs are a standard representation for data in the social sciences, cybersecurity, computer infrastructure, bioinformatics, and more. Typical real-world graphs are sparse, meaning the average degree is small (in the tens, while the number of vertices is more than millions). When graph data is collected from a source, a major task is to perform data exploration. Thus, any region of ``density" is of interest, since it indicates special structure. An important goal is to cover a significant portion of the graph using dense subgraphs. Existing algorithms that find many dense subgraphs do not have overlapping output, and hence provide limited coverage. Other methods that produce overlapping clusters do not generate dense subgraphs. The main goal of this paper is to develop provable and practical methods that can provide overlapping dense subgraphs that can cover large portions of real-world networks. Our contribution is an algorithm CohortRecovery that achieves this goal. We first develop a mathematical framework of triadic cohorts that captures the notion of ``detectable dense subgraphs'' that potentially overlap. We prove that CohortRecovery can output a set of dense subgraphs, such that each triadic cohort is almost completely contained in some dense subgraph. We give a practical implementation of CohortRecovery and demonstrate it on a variety of datasets. It typically runs in under ten minutes on a commodity machine even on graphs with tens of millions of edges. For numerous datasets, CohortRecovery is able to cover more than 25\% of the vertices in non-trivial subgraphs of density more than 0.8, and is significantly better than a wide variety of scalable graph clustering/community detection algorithms. Moreover, we demonstrate that output of CohortRecovery captures ground truth clusters obtained by manual curation.