Large-scale bioacoustic detection using semantic segmentation: a deep learning framework applied to fin whale calls in ocean-bottom seismometer recordings

Jocelyn Japnanto; Alex A. Saoulis; Miriam Romagosa; Rita Leitão; Gabrielle Arrieta; Mónica A. Silva; Matthew Graham; Ana M. G. Ferreira

arXiv · 2609.13281

Large-scale bioacoustic detection using semantic segmentation: a deep learning framework applied to fin whale calls in ocean-bottom seismometer recordings

Jocelyn Japnanto·Alex A. Saoulis·Miriam Romagosa·Rita Leitão·Gabrielle Arrieta·Mónica A. Silva·Matthew Graham·Ana M. G. Ferreira

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Abstract

Ocean-bottom seismometers (OBS), originally deployed for geophysical research, continuously record low-frequency sound for months to years across broad areas of ocean, offering a largely untapped resource for passive acoustic monitoring (PAM) of baleen whales. Realising this potential requires automated detection methods that operate reliably across the varied conditions in large sensor networks. We present a deep learning semantic segmentation framework that detects the 20-Hz notes of fin whales (Balaenoptera physalus) in OBS spectrograms, assigning each pixel a probability of belonging to a call and converting the resulting probability maps into time-frequency bounding boxes describing individual detections. We trained the model on hydrophone data from one OBS deployment in the Azores-Madeira-Canaries region and applied it without retraining to vertical-component seismometer data from a second, geographically distinct deployment, showing that a single trained model generalises across sensor types and recording environments. Applied to 378,912 h of recordings from 46 OBS sites, the detector identified 6.3 million calls, forming the largest fin whale call catalogue assembled to date, with high precision (~97%) across both deployments. The resulting catalogue resolves call timing and spectral structure accurately enough to support ecological analyses, revealing coherent seasonal shifts in three persistent inter-note interval (INI) groups across the singing season and basin-scale patterns in calling activity. By transforming existing geophysical infrastructure into a scalable sensing network, our approach substantially expands the spatial and temporal reach of PAM without new hardware investment, offering a transferable framework for tracking other low-frequency vocalising species and informing conservation planning, marine spatial management, and abundance estimation across large scales.

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Jocelyn Japnanto, Alex A. Saoulis, Miriam Romagosa, Rita Leitão, Gabrielle Arrieta, Mónica A. Silva, Matthew Graham, Ana M. G. Ferreira. 2026-09-08. Large-scale bioacoustic detection using semantic segmentation: a deep learning framework applied to fin whale calls in ocean-bottom seismometer recordings. https://arxiv.org/abs/2609.13281

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