Search arXiv⌕ Search
Home/Archive/arXiv

arXiv · cond-mat/0005317

Fluctuating Filaments I: Statistical Mechanics of Helices

S. Panyukov·Y. Rabin
View original source ↗Read source document ↗Export metadata ↓

Abstract

We examine the effects of thermal fluctuations on thin elastic filaments with non-circular cross-section and arbitrary spontaneous curvature and torsion. Analytical expressions for orientational correlation functions and for the persistence length of helices are derived, and it is found that this length varies non-monotonically with the strength of thermal fluctuations. In the weak fluctuation regime, the local helical structure is preserved and the statistical properties are dominated by long wavelength bending and torsion modes. As the amplitude of fluctuations is increased, the helix ``melts'' and all memory of intrinsic helical structure is lost. Spontaneous twist of the cross--section leads to resonant dependence of the persistence length on the twist rate.

Explore related subjects

cond-mat.softcond-mat.stat-mech

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

S. Panyukov, Y. Rabin. 2000-05-19. Fluctuating Filaments I: Statistical Mechanics of Helices. https://doi.org/10.1103/physreve.62.7135

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Reciprocal theorem for ion-releasing colloidal particles

We describe a generalization of the reciprocal theorem for particles suspended in electrolyte solutions and subjected to an electric field that could be either applied or emerged spontaneously. Attention is focused on catalytic colloids that release ions. The power of the generalization is to capture the effect of formation of a secondary cloud around a catalytic particle, which is equivalent to accounting for an excess charge $Q$ of a system. Our results show that the propulsion speed of catalytic particles has an extra contribution proportional to $Q$ and an external field $E_{\infty}$. The derived equation for $Q$ reveals that its sign is defined by the difference in the ion diffusivity and the magnitude is controlled by the average flux of ions from the surface. We demonstrate the application of the generalized theorem to electro- and diffusiophoresis of homogeneously releasing ions passive particles, as well as to a self-propulsion of inhomogeneous active particles (microswimmers). It is shown that whilst in some situations the extra term in the reciprocal theorem vanishes or has a little effect on the particle mobility, in many others it may dramatically change its magnitude, and even sign. In addition, the relevance of our results for microswimmer interactions is discussed briefly.

cond-mat.soft↗
arXiv2026

Multigeometric Breathing Mode Framework for viruses

The estimation of the breathing mode frequency for viral capsids remains a persistent challenge across literature which spawned various frameworks and methodologies. However, discrepancies were observed between the experimental Low Frequency Raman Scattering (LFRS) and calculated pre-existing values. To solve this discrepancy, we propose a framework which is developed to determine the breathing-mode frequency by modelling the virus as a macroscopic coupled harmonic oscillator. By integrating mass-loading directly into the classical elastodynamic equations, this model yields an analytical expression that couples the system's total inertia with its specific geometry. Moreover, the viruses are segregated according to their geometries into three coordinates to acquire their respective geometric eigen values. Here we illustrate how the proposed Multigeometric Breathing mode Framework for Virus (MBFV) outperforms prior models by yielding closer values than the pre-existing frameworks upon validating against LFRS.

cond-mat.soft↗
arXiv2026

Insight into ordering at nematic twist-bend interfaces

Twist-bend nematics formed by achiral particles support heliconical domains of opposite handedness. Using Monte Carlo and molecular dynamics simulations of repulsive bent particles, we study the interface between two such domains. Rather than a gradually untwisting texture, we find a density-modulated splay-bend-twist structure. The density modulation is along the helix axis with a period of approximately half the bulk pitch, while the twist is locally enhanced in magnitude, alternates in sign, and vanishes only on an undulating surface. An explicit director interpolation shows how gradients along the helix axis and across the interface combine to produce an undulating zero-twist surface.

cond-mat.soft↗