Search arXiv⌕ Search

arXiv · cond-mat/9908428

Reentrant Condensation of DNA induced by Multivalent Counterions

Abstract

A theory of condensation and resolubilization of a dilute DNA solution with growing concentration of multivalent cations, N is suggested. It is based on a new theory of screening of a macroion by multivalent cations, which shows that due to strong cation correlations at the surface of DNA the net charge of DNA changes sign at some small concentration of cations N_0. DNA condensation takes place in the vicinity of N_0, where absolute value of the DNA net charge is small and the correlation induced short range attraction dominates the Coulomb repulsion. At N > N_0 positive DNA should move in the oppisite direction in an electrophoresis experiment. From comparison of our theory with experimental values of condensation and resolubilization thresholds for DNA solution containing Spe$^{4+}$, we obtain that N_0 = 3.2 mM and that the energy of DNA condensation per nucleotide is $0.07 k_B T$.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

T. T. Nguyen, I. Rouzina, B. I. Shklovskii. 1999-09-07. Reentrant Condensation of DNA induced by Multivalent Counterions. https://doi.org/10.1063/1.480819

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Control of filament network rigidity by the condensation of crowding molecules

Understanding how liquid-liquid phase separation impacts the mechanics of filament networks is a fundamental physical problem at the heart of biological cellular processes and soft material design. While a few theoretical mechanisms have been proposed, a clear demonstration of the direct coupling of phase separation to the overall network stiffness is missing. We report experiments that reveal a universal mechanism by which the condensation of macromolecular crowders induces a rigidity transition in a model filament network. We reconstituted stiff sterically interacting helical filaments and polymeric crowders. Initially, the macromolecules were uniformly dissolved and the filaments formed bundles that assembled a rigid entangled network. Once the crowders condensed into droplets, the network structure lost its rigidity and its mechanical response weakened by an order-of-magnitude. The subsequent dissolution of the condensates was accompanied by the re-establishment of rigidity. Our results show that crowder phase separation modulates the mechanics of filament networks by tuning the osmotic pressure holding the network together. This principle may serve as a paradigm for devising dynamically tunable filamentous materials.

cond-mat.soft↗

Speed up of passive tracers in mixtures with active chemical reactions

Diffusivity of passive tracers in complex mixtures is widely relevant for industrial applications and for probing biological systems. Interactions with the surrounding medium typically generate a drag force that suppresses tracer diffusion, although self-propulsion can accelerate tracers via active fluctuations. Similar effects are not understood in mixtures with particle conversion and exchange, although these are particularly relevant in biological contexts, where actively driven reactions prevail. By studying a thermodynamically consistent model of chemical reactions in mixtures, we show that reactions provide an additional relaxation pathway that suppresses interaction-induced memory, reducing the drag on tracers and restoring their diffusivity toward the value expected in the absence of solutes. Moreover, active reactions generate nonequilibrium fluctuations that can push tracer diffusivity beyond this limit, an effect we confirm with particle-based simulations. Our results identify chemical activity as a distinct route to controlling mass transport and offer a framework for interpreting microrheology experiments in chemically active mixtures.

cond-mat.soft↗

Diffusion of charged rods across 3D varying section channels

We analyze the transport of rod-like particles by diffusion and drift in a three-dimensional channel with varying circular or elliptic cross section. Applying the Fick-Jacobs approximation to the transport equation of the particles' probability distribution, we derive an effective one-dimensional substitute model and the associated free energy profile. Our results show that the data for the mean first passage time of rods, once expressed as a function of the effective free energy barrier, collapse onto the same master curve as obtained for point or spherical particles. The observed universality provides a simple framework for predicting transport times of anisotropic particles in confined geometries without resolving the full multidimensional dynamics.

cond-mat.soft↗