Search arXiv⌕ Search

arXiv · physics/0204049

Further generalization and numerical implementation of pseudo-time Schroedinger equations for quantum scattering calculations

Abstract

We review and further develop the recently introduced numerical approach for scattering calculations based on a so called pseudo-time Schroedinger equation, which is in turn a modification of the damped Chebyshev polynomial expansion scheme. The method utilizes a special energy-dependent form for the absorbing potential in the time-independent Schroedinger equation, in which the complex energy spectrum E_k is mapped to u_k inside the unit disk, where u_k are the eigenvalues of some explicitly known sparse matrix U. Most importantly for the numerical implementation, all the physical eigenvalues u_k are extreme eigenvalues of U, which allows one to extract these eigenvalues very efficiently by harmonic inversion of a pseudo-time autocorrelation function using the filter diagonalization method. The computation of 2T steps of the autocorrelation function requires only T sparse real matrix-vector multiplications. We describe and compare different schemes, effectively corresponding to different choices of the energy-dependent absorbing potential, and test them numerically by calculating resonances of the HCO molecule. Our numerical tests suggest an optimal scheme that provide accurate estimates for most resonance states.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

V. A. Mandelshtam, A. Neumaier. 2002-04-17. Further generalization and numerical implementation of pseudo-time Schroedinger equations for quantum scattering calculations. https://arxiv.org/abs/physics/0204049

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Estimating Irving-Kirkwood pressure profiles from per-atom virial and density profiles: a closure for the contour-dependent term in planar liquid films

The local pressure tensor of an inhomogeneous fluid is not unique. Two tangential profiles are in common use in planar simulations: the Irving-Kirkwood (IK) profile, which requires a dedicated pass over every pair of atoms for every slab, and the per-atom virial (PAV) profile, which molecular-dynamics codes produce at negligible cost and coincides with the Harasima contour. The two differ by the derivative of a pair quantity, P_T^IK - P_T^PAV = dQ/dz. We show that, for Lennard-Jones free-standing films, Q(z) can be predicted from the density profile and the bulk radial distribution function of the coexisting liquid: under the closure rho2(r1,r2) ~ rho(z1) rho(z2) g(r12), with a pair-local interpolation of g between its liquid and dilute limits, Q is a double integral of rho(z) against a kernel built from u'(r) g(r). The estimator P_T^IK,est = P_T^PAV + dQ/dz is tested against IK profiles measured on the same trajectories for 20 films (thicknesses 7-25 sigma, three cutoff radii, two temperatures): the root-mean-square residual is 0.001-0.002 epsilon/sigma^3, against 0.010-0.021 for the uncorrected profile, and Q, the amount that the contour choice transfers between the two interfaces of a film with non-equivalent surfaces, is recovered to within 0.6% of the surface tension. Applied to the normal component, the same closure removes 83-92% of the spurious structure of the per-atom zz profile, a test that needs no IK run. Its mixture form is validated on three two-component films with an adsorbate unequally distributed between their faces, where it resolves the tension of each face; a clean face recovers the tension of the pure film.

physics.chem-ph↗

OPRD-Imp: a dataset of experimentally observed impurities and side products in multi-step pharmaceutical syntheses

Predicting reaction impurities is a critical yet persistently data-limited challenge in pharmaceutical process chemistry. While machine learning models for reaction outcome prediction have advanced rapidly, benchmarking their ability to predict impurities remains impractical due to the absence of curated, publicly accessible datasets. We present OPRD-Imp, a dataset of 229 organic reactions drawn from 62 publications in Organic Process Research & Development, each annotated with experimentally observed impurities and their mechanistic origins. A total of 784 impurity entries is provided, classified into four origin categories. Reactions are represented as reaction SMILES and impurities as individual SMILES strings, with multi-step synthetic route connectivity preserved. All data were manually extracted from the source publications by trained chemists following a standardized extraction protocol, with expert chemical validation and manual structure drawing. OPRD-Imp is intended to serve as a benchmark resource for evaluating models that predict reaction impurities, providing experimentally reported impurity annotations and mechanistic origin labels that are not systematically represented in conventional reaction datasets.

physics.chem-ph↗

Drift-React: One-step Generation of Reaction Pathways via SE(3) Drifting Fields

Mapping reaction pathways and transition states (TS) is fundamental to chemistry but computationally expensive at scale. The minimum energy pathway (MEP) dictates reaction rates and mechanisms, yet recovering it via electronic-structure methods requires thousands of costly force evaluations. Recent generative models accelerate TS identification but rely on iterative inference and only predict isolated saddle-point snapshots, missing the continuous reaction trajectory. We introduce Drift-React, an $\mathrm{SE}(3)$-equivariant generative framework that predicts complete reaction pathways in a single forward pass from only reactant and product geometries. By shifting distribution evolution to training via a Sinkhorn-weighted drifting field, Drift-React eliminates both the iterative force evaluations of NEB-style methods and the sequential ODE/SDE integration of diffusion and flow matching models. Evaluated on the Transition1x and Halo8 datasets, our one-step model generates physically consistent MEPs that accurately capture energetic bottlenecks and enable arbitrary-resolution sampling along the reaction coordinate. For isolated TS prediction, Drift-React matches the sub-Ångström accuracy of state-of-the-art iterative models while delivering orders-of-magnitude acceleration, clearing a major computational bottleneck for large-scale reaction network exploration.

physics.chem-ph↗