arXiv subjects

Adam Marblestone

Publications and source records attributed to Adam Marblestone.

10 recordsLinked to original sources

arXiv2026

Compiling molecular ultrastructure into neural dynamics

High-resolution brain imaging can now capture not just synapse locations but their molecular composition, with the cost of such mapping falling exponentially. Yet such ultrastructural data has so far told us little about local neuronal physiology - specifically, the parameters (e.g., synaptic efficacies, local conductances) that govern neural dynamics. We propose to translate molecularly annotated ultrastructure into physiology, introducing the concept of an ultrastructure-to-dynamics compiler: a learned mapping from molecularly annotated ultrastructure to simulator-ready, uncertainty-aware physiological parameters. The requirement is paired training data, with jointly acquired ultrastructure from imaging, and dynamical responses to perturbations from physiological experiments. With this data we can train models that predict local physiology directly from structure. Such a compiler would support biophysical simulations by turning anatomical maps into models of circuit dynamics, shifting structure-to-function from a descriptive program to a predictive one and opening routes to understanding neural computation and forecasting intervention effects.

q-bio.NC↗

arXiv2025

Applied Astrobiology: An Integrated Approach to the Future of Life in Space

Searching for extraterrestrial life and supporting human life in space are traditionally regarded as separate challenges. However, there are significant benefits to an approach that treats them as different aspects of the same essential inquiry: How can we conceptualize life beyond our home planet?

physics.pop-ph↗

arXiv2024

NeuroAI for AI Safety

As AI systems become increasingly powerful, the need for safe AI has become more pressing. Humans are an attractive model for AI safety: as the only known agents capable of general intelligence, they perform robustly even under conditions that deviate significantly from prior experiences, explore the world safely, understand pragmatics, and can cooperate to meet their intrinsic goals. Intelligence, when coupled with cooperation and safety mechanisms, can drive sustained progress and well-being. These properties are a function of the architecture of the brain and the learning algorithms it implements. Neuroscience may thus hold important keys to technical AI safety that are currently underexplored and underutilized. In this roadmap, we highlight and critically evaluate several paths toward AI safety inspired by neuroscience: emulating the brain's representations, information processing, and architecture; building robust sensory and motor systems from imitating brain data and bodies; fine-tuning AI systems on brain data; advancing interpretability using neuroscience methods; and scaling up cognitively-inspired architectures. We make several concrete recommendations for how neuroscience can positively impact AI safety.

cs.AI↗

arXiv2023

The time is ripe to reverse engineer an entire nervous system: simulating behavior from neural interactions

Just like electrical engineers understand how microprocessors execute programs in terms of how transistor currents are affected by their inputs, neuroscientists want to understand behavior production in terms of how neuronal outputs are affected by their inputs and internal states. This dependency of neuronal outputs on inputs can be described by a state-dependent input-output (IO)-function. However, to reliably identify these IO-functions, we need to perturb each input and combinations of inputs while observing all the outputs. Here, we argue that such completeness is possible in C. elegans; a complete description that goes all the way from the activity of every neuron to predict behavior. The established and growing toolkit of optophysiology can non-invasively capture and control every neuron's activity and scale to countless experiments. The information from many such experiments can be pooled while capturing the inter-individual variability because neuronal identity and function are largely conserved across individuals. Just like electrical engineers use transistor IO-functions to simulate program execution, we argue that neuronal IO-functions could be used to simulate the impressive breadth of brain states and behaviors of C. elegans.

q-bio.NC↗

arXiv2022

Toward Next-Generation Artificial Intelligence: Catalyzing the NeuroAI Revolution

Neuroscience has long been an essential driver of progress in artificial intelligence (AI). We propose that to accelerate progress in AI, we must invest in fundamental research in NeuroAI. A core component of this is the embodied Turing test, which challenges AI animal models to interact with the sensorimotor world at skill levels akin to their living counterparts. The embodied Turing test shifts the focus from those capabilities like game playing and language that are especially well-developed or uniquely human to those capabilities, inherited from over 500 million years of evolution, that are shared with all animals. Building models that can pass the embodied Turing test will provide a roadmap for the next generation of AI.

cs.AI↗

arXiv2020

Gaussian Gated Linear Networks

We propose the Gaussian Gated Linear Network (G-GLN), an extension to the recently proposed GLN family of deep neural networks. Instead of using backpropagation to learn features, GLNs have a distributed and local credit assignment mechanism based on optimizing a convex objective. This gives rise to many desirable properties including universality, data-efficient online learning, trivial interpretability and robustness to catastrophic forgetting. We extend the GLN framework from classification to multiple regression and density modelling by generalizing geometric mixing to a product of Gaussian densities. The G-GLN achieves competitive or state-of-the-art performance on several univariate and multivariate regression benchmarks, and we demonstrate its applicability to practical tasks including online contextual bandits and density estimation via denoising.

cs.LG↗

arXiv2020

Product Kanerva Machines: Factorized Bayesian Memory

An ideal cognitively-inspired memory system would compress and organize incoming items. The Kanerva Machine (Wu et al, 2018) is a Bayesian model that naturally implements online memory compression. However, the organization of the Kanerva Machine is limited by its use of a single Gaussian random matrix for storage. Here we introduce the Product Kanerva Machine, which dynamically combines many smaller Kanerva Machines. Its hierarchical structure provides a principled way to abstract invariant features and gives scaling and capacity advantages over single Kanerva Machines. We show that it can exhibit unsupervised clustering, find sparse and combinatorial allocation patterns, and discover spatial tunings that approximately factorize simple images by object.

cs.LG↗

arXiv2016

Grand Challenges for Global Brain Sciences

The next grand challenges for society and science are in the brain sciences. A collection of 60+ scientists from around the world, together with 10+ observers from national, private, and foundations, spent two days together discussing the top challenges that we could solve as a global community in the next decade. We eventually settled on three challenges, spanning anatomy, physiology, and medicine. Addressing all three challenges requires novel computational infrastructure. The group proposed the advent of The International Brain Station (TIBS), to address these challenges, and launch brain sciences to the next level of understanding.

q-bio.NC↗

arXiv2016

Towards an integration of deep learning and neuroscience

Neuroscience has focused on the detailed implementation of computation, studying neural codes, dynamics and circuits. In machine learning, however, artificial neural networks tend to eschew precisely designed codes, dynamics or circuits in favor of brute force optimization of a cost function, often using simple and relatively uniform initial architectures. Two recent developments have emerged within machine learning that create an opportunity to connect these seemingly divergent perspectives. First, structured architectures are used, including dedicated systems for attention, recursion and various forms of short- and long-term memory storage. Second, cost functions and training procedures have become more complex and are varied across layers and over time. Here we think about the brain in terms of these ideas. We hypothesize that (1) the brain optimizes cost functions, (2) these cost functions are diverse and differ across brain locations and over development, and (3) optimization operates within a pre-structured architecture matched to the computational problems posed by behavior. Such a heterogeneously optimized system, enabled by a series of interacting cost functions, serves to make learning data-efficient and precisely targeted to the needs of the organism. We suggest directions by which neuroscience could seek to refine and test these hypotheses.

q-bio.NC↗

arXiv2009

Signal-to-pump back-action and self-oscillation in Double-Pump Josephson Parametric Amplifier

We present the theory of a Josephson parametric amplifier employing two pump sources. Our calculations are based on Input-Output Theory, and can easily be generalized to any coupled system involving parametric interactions. We analyze the operation of the device, taking into account the feedback introduced by the reaction of the signal and noise on the pump power, and in this framework, compute the response functions of interest - signal and idler gains, internal gain of the amplifier, and self-oscillation signal amplitude. To account for this back-action between signal and pump, we adopt a mean-field approach and self-consistently explore the boundary between amplification and self-oscillation. The coincidence of bifurcation and self-oscillation thresholds reveals that the origin of coherent emission of the amplifier lies in the multi-wave mixing of the noise components. Incorporation of the back-action leads the system to exhibit hysteresis, dependent on parameters like temperature and detuning from resonance. Our analysis also shows that the resonance condition itself changes in the presence of back-action and this can be understood in terms of the change in plasma frequency of the junction. The potential of the double pump amplifier for quantum-limited measurements and as a squeezer is also discussed.

cond-mat.mes-hall↗