arXiv subjects

Alberto Redaelli

Publications and source records attributed to Alberto Redaelli.

16 recordsLinked to original sources

arXiv2026

A Scalable AI-Powered System for Explainable Machine Learning Pipelines in Brain Tumor

Artificial intelligence and radiomics are increasingly used in brain tumor research, yet their translation into clinical practice remains limited by fragmented workflows, poor transparency, and weak integration with end users' needs. We present the first version of a scalable web-based visual analytics system designed to support radiomics-driven machine learning inference in neuro-oncology. The platform integrates three core functions within a single interface: cohort management from structured clinical tables, radiomic feature extraction from medical images and segmentation masks, and guarded inference with pre-trained machine learning models. The system was developed through an iterative user-centred design process and evaluated on both a public glioblastoma dataset and a proprietary clinical cohort. A key contribution is the explicit exposure of intermediate workflow artifacts, which improves traceability, interpretability, and responsible use of AI. By combining portability, inspectability, and deployment simplicity, the proposed framework offers a practical foundation for clinically oriented AI applications in brain tumor analysis.

cs.SE↗

arXiv2026

Radiomics- and Clinical Feature-Driven Prediction of Volumetric Response in Skull-Base Meningioma after CyberKnife Radiosurgery

Skull-base meningiomas are often characterized by favorable long-term prognosis, yet their anatomical complexity and proximity to critical neurovascular structures make treatment selection challenging. Stereotactic radiosurgery with CyberKnife represents an effective therapeutic option when surgical resection is not feasible; however, not all patients benefit equally from this treatment. Early identification of patients likely to respond to radiosurgery remains an open clinical problem. In this study, we propose a radiomics- and clinical feature-driven framework for predicting volumetric response in skull-base meningiomas treated with CyberKnife. Unlike most existing approaches that focus on progression-free survival or recurrence, our method targets volumetric response as an indicator of treatment efficacy. Pre-treatment MRI images from 104 patients were processed to extract radiomic features, which were combined with clinical variables and analyzed using six models. To ensure methodological rigor, the entire modeling process was implemented within a nested cross-validation scheme. Among the evaluated models, TabPFN achieved the best overall performance, with an AUC of 0.81 and consistently favorable classification metrics. These results suggest that advanced machine learning architectures, when combined with robust validation strategies, can effectively capture patterns associated with treatment response even in small-sample, high-dimensional settings.

cs.CV↗

arXiv2026

Touchless Intraoperative Image Access System Based on Vision-Based Hand Tracking

Touchless interaction with medical images is becoming increasingly important in the surgical field, where sterility and continuity of the operational workflow are essential requirements. This work presents a vision-based system for intraoperative navigation of medical images through hand gestures acquired using a single RGB camera. Unlike many existing solutions, the system does not require additional hardware or user-specific training. Hand tracking is performed in real time using MediaPipe Hands, which provides a 2.5D estimation of hand landmarks. Simple and intuitive gestures are then mapped into translation, rotation, and zoom commands, enabling continuous and natural interaction with the image viewer. The system architecture is independent from the visualization software and, for implementation simplicity, in this study it was integrated with PyVista. Performance was evaluated through frame-level logging and quantitative analysis of latency, stability, and interaction robustness metrics. Experimental results highlight real-time behavior, with reduced latencies and stable control, in line with the requirements of fluid interaction. The system demonstrates the feasibility of a low-cost touchless solution for intraoperative access to medical images, laying the groundwork for future clinical evaluations.

cs.CV↗

arXiv2026

Physics-driven Sonification for Improving Multisensory Needle Guidance in Percutaneous Epicardial Access

Percutaneous epicardial access (PEA), performed on a beating heart under fluoroscopy, enables arrhythmia treatment. However, advancing a needle toward the thin and moving pericardium remains highly challenging and risky. To address this problem, we present a physics-driven sonification method for Extended Reality (XR)-based multisensory navigation to enhance user perception during the critical needle landing phase in PEA. Dynamic cardiac anatomy from 4D CTA was reconstructed and registered to a real-world coordinate system. Real-time needle tracking provided the position of the needle tip relative to moving cardiac structures and drove an audio-visual feedback module. The visual display presented navigational cues and dynamic anatomy, while the auditory display encoded physiological cardiac states using a multilayer physical membrane model. A phantom study was conducted with twelve cardiologists performing needle insertions under visual-only and multisensory feedback. The multisensory method significantly improved navigation safety ($\chi^2 = 11.30$, $p < 0.01$), reducing myocardial contact (3.64% vs. 7.27%) and increasing correct access (90.91% vs. 52.73%). Needle placement accuracy improved, with closer membrane proximity (Cliff delta = 0.19) and reduced variability ($p < 0.05$). Execution time was comparable, while time-accuracy correlations differed significantly between modalities ($p < 0.01$). NASA-TLX indicated lower cognitive load with multisensory guidance ($p < 0.01$). These results demonstrate the feasibility of physics-driven sonification for improving spatiotemporal awareness and supporting user-centered surgical navigation.

cs.HC↗

arXiv2025

BioSonix: Can Physics-Based Sonification Perceptualize Tissue Deformations From Tool Interactions?

Perceptualizing tool interactions with deformable structures in surgical procedures remains challenging, as unimodal visualization techniques often fail to capture the complexity of these interactions due to constraints such as occlusion and limited depth perception. This paper presents a novel approach to augment tool navigation in mixed reality environments by providing auditory representations of tool-tissue dynamics, particularly for interactions with soft tissue. BioSonix, a physics-informed design framework, utilizes tissue displacements in 3D space to compute excitation forces for a sound model encoding tissue properties such as stiffness and density. Biomechanical simulations were employed to model particle displacements resulting from tool-tissue interactions, establishing a robust foundation for the method. An optimization approach was used to define configurations for capturing diverse interaction scenarios with varying tool trajectories. Experiments were conducted to validate the accuracy of the sound-displacement mappings. Additionally, two user studies were performed: the first involved two clinical professionals (a neuroradiologist and a cardiologist), who confirmed the method's impact and achieved high task accuracy; the second included 22 biomedical experts, who demonstrated high discrimination accuracy in tissue differentiation and targeting tasks. The results revealed a strong correlation between tool-tissue dynamics and their corresponding auditory profiles, highlighting the potential of these sound representations to enhance the intuitive understanding of complex interactions.

cs.SD↗

arXiv2025

Glioblastoma Overall Survival Prediction With Vision Transformers

Glioblastoma is one of the most aggressive and common brain tumors, with a median survival of 10-15 months. Predicting Overall Survival (OS) is critical for personalizing treatment strategies and aligning clinical decisions with patient outcomes. In this study, we propose a novel Artificial Intelligence (AI) approach for OS prediction using Magnetic Resonance Imaging (MRI) images, exploiting Vision Transformers (ViTs) to extract hidden features directly from MRI images, eliminating the need of tumor segmentation. Unlike traditional approaches, our method simplifies the workflow and reduces computational resource requirements. The proposed model was evaluated on the BRATS dataset, reaching an accuracy of 62.5% on the test set, comparable to the top-performing methods. Additionally, it demonstrated balanced performance across precision, recall, and F1 score, overcoming the best model in these metrics. The dataset size limits the generalization of the ViT which typically requires larger datasets compared to convolutional neural networks. This limitation in generalization is observed across all the cited studies. This work highlights the applicability of ViTs for downsampled medical imaging tasks and establishes a foundation for OS prediction models that are computationally efficient and do not rely on segmentation.

cs.CV↗

arXiv2025

Pericoronary adipose tissue attenuation as a predictor of functional severity of coronary stenosis

Objective: This study aims to evaluate the functional significance of coronary stenosis by analyzing low-level radiomic features of the pericoronary adipose tissue (PCAT) surrounding the lesions, which are indicative of its inflammation status. Methods: A dataset of 72 patients who underwent coronary computed tomography angiography (CCTA) was analyzed, with 3D segmentation and computational fluid dynamics (CFD) simulations from a prior study. Centerlines of the main epicardial branches were automatically extracted, and lesions identified using Gaussian kernel regression to estimate healthy branch caliber. PCAT features were computed per vessel following guideline recommendations and per lesion within a region extending radially for two vessel radii. Features like fat volume and mean attenuation (FAI) were analyzed for their relationship with CFD-derived hemodynamic biomarkers, such as fractional flow reserve (FFR) and wall shear stress (WSS). These features also informed a machine learning (ML) model for classifying potentially ischemic lesions. Results: PCAT exhibited, on average, higher attenuation in the presence of hemodynamically significant lesions (i.e., FFR < 0.80), although this difference was of limited statistical significance. The ML classifier, trained on PCAT features, successfully distinguished potentially ischemic lesions, yielding average accuracy of 0.84. Conclusion: PCAT attenuation is correlated with the functional status of coronary stenosis and can be used to inform ML models for predicting potential ischemia. Significance: PCAT features, readily available from CCTA, can be used to predict the hemodynamic characteristics of a lesion without the need for an invasive FFR examination.

eess.IV↗

arXiv2025

Learning Hemodynamic Scalar Fields on Coronary Artery Meshes: A Benchmark of Geometric Deep Learning Models

Coronary artery disease, caused by the narrowing of coronary vessels due to atherosclerosis, is the leading cause of death worldwide. The diagnostic gold standard, fractional flow reserve (FFR), measures the trans-stenotic pressure ratio during maximal vasodilation but is invasive and costly. This has driven the development of virtual FFR (vFFR) using computational fluid dynamics (CFD) to simulate coronary flow. Geometric deep learning algorithms have shown promise for learning features on meshes, including cardiovascular research applications. This study empirically analyzes various backends for predicting vFFR fields in coronary arteries as CFD surrogates, comparing six backends for learning hemodynamics on meshes using CFD solutions as ground truth. The study has two parts: i) Using 1,500 synthetic left coronary artery bifurcations, models were trained to predict pressure-related fields for vFFR reconstruction, comparing different learning variables. ii) Using 427 patient-specific CFD simulations, experiments were repeated focusing on the best-performing learning variable from the synthetic dataset. Most backends performed well on the synthetic dataset, especially when predicting pressure drop over the manifold. Transformer-based backends outperformed others when predicting pressure and vFFR fields and were the only models achieving strong performance on patient-specific data, excelling in both average per-point error and vFFR accuracy in stenotic lesions. These results suggest geometric deep learning backends can effectively replace CFD for simple geometries, while transformer-based networks are superior for complex, heterogeneous datasets. Pressure drop was identified as the optimal network output for learning pressure-related fields.

eess.IV↗

arXiv2024

Deep vectorised operators for pulsatile hemodynamics estimation in coronary arteries from a steady-state prior

Cardiovascular hemodynamic fields provide valuable medical decision markers for coronary artery disease. Computational fluid dynamics (CFD) is the gold standard for accurate, non-invasive evaluation of these quantities in silico. In this work, we propose a time-efficient surrogate model, powered by machine learning, for the estimation of pulsatile hemodynamics based on steady-state priors. We introduce deep vectorised operators, a modelling framework for discretisation-independent learning on infinite-dimensional function spaces. The underlying neural architecture is a neural field conditioned on hemodynamic boundary conditions. Importantly, we show how relaxing the requirement of point-wise action to permutation-equivariance leads to a family of models that can be parametrised by message passing and self-attention layers. We evaluate our approach on a dataset of 74 stenotic coronary arteries extracted from coronary computed tomography angiography (CCTA) with patient-specific pulsatile CFD simulations as ground truth. We show that our model produces accurate estimates of the pulsatile velocity and pressure (approximation disparity 0.368 $\pm$ 0.079) while being agnostic ($p < 0.05$ in a one-way ANOVA test) to re-sampling of the source domain, i.e. discretisation-independent. This shows that deep vectorised operators are a powerful modelling tool for cardiovascular hemodynamics estimation in coronary arteries and beyond.

q-bio.QM↗

arXiv2024

An automated and time efficient framework for simulation of coronary blood flow under steady and pulsatile conditions

Fractional flow reserve (FFR) is the gold standard for diagnosing coronary artery disease (CAD). FFRCT uses computational fluid dynamics (CFD) to evaluate FFR non-invasively by simulating coronary flow in geometries reconstructed from computed tomography (CT). However, it faces challenges related to the cost of computing and uncertainties in defining patient-specific boundary conditions (BCs). We investigated using time-averaged steady BCs instead of pulsatile ones to reduce computational time and deployed a self-adjusting method for tuning BCs to patient clinical data. 133 coronary arteries were reconstructed from CT images of CAD patients. For each vessel, invasive FFR was measured. Steady BCs for CFD were defined in two steps: i) rest BCs were extrapolated from clinical and image-derived data; ii) hyperemic BCs were computed from resting conditions. Flow rate was iteratively adjusted during the simulation until patient aortic pressure was matched. Pulsatile BCs were defined using the convergence values of steady BCs. Lesion-specific hemodynamic indexes were computed and compared between groups of patients indicated for surgery and those not. The whole pipeline was implemented as a straightforward, fully automated process. Steady and pulsatile FFRCT showed a strong correlation (r=0.988) and correlated with invasive FFR (r=0.797). The per-point difference between the pressure and FFRCT field predicted by the two methods was below 0.01 and 0.02, respectively. Both approaches exhibited good diagnostic performance: accuracy was 0.860 and 0.864, with AUCs of 0.923 and 0.912, for steady and pulsatile cases, respectively. Computational time for steady BCs CFD was approximately 30-fold lower than for the pulsatile case. This work demonstrates the feasibility of using steady BCs CFD for computing FFRCT in coronary arteries and its performance in a fully automated pipeline.

physics.med-ph↗

arXiv2024

Augmented Reality and Human-Robot Collaboration Framework for Percutaneous Nephrolithotomy: System Design, Implementation, and Performance Metrics

During Percutaneous Nephrolithotomy (PCNL) operations, the surgeon is required to define the incision point on the patient's back, align the needle to a pre-planned path, and perform puncture operations afterward. The procedure is currently performed manually using ultrasound or fluoroscopy imaging for needle orientation, which, however, implies limited accuracy and low reproducibility. This work incorporates Augmented Reality (AR) visualization with an optical see-through head-mounted display (OST-HMD) and Human-Robot Collaboration (HRC) framework to empower the surgeon's task completion performance. In detail, Eye-to-Hand calibration, system registration, and hologram model registration are performed to realize visual guidance. A Cartesian impedance controller is used to guide the operator during the needle puncture task execution. Experiments are conducted to verify the system performance compared with conventional manual puncture procedures and a 2D monitor-based visualisation interface. The results showed that the proposed framework achieves the lowest median and standard deviation error across all the experimental groups, respectively. Furthermore, the NASA-TLX user evaluation results indicate that the proposed framework requires the lowest workload score for task completion compared to other experimental setups. The proposed framework exhibits significant potential for clinical application in the PCNL task, as it enhances the surgeon's perception capability, facilitates collision-free needle insertion path planning, and minimises errors in task completion.

cs.RO↗

arXiv2023

Implicit neural representations for unsupervised super-resolution and denoising of 4D flow MRI

4D flow MRI is a non-invasive imaging method that can measure blood flow velocities over time. However, the velocity fields detected by this technique have limitations due to low resolution and measurement noise. Coordinate-based neural networks have been researched to improve accuracy, with SIRENs being suitable for super-resolution tasks. Our study investigates SIRENs for time-varying 3-directional velocity fields measured in the aorta by 4D flow MRI, achieving denoising and super-resolution. We trained our method on voxel coordinates and benchmarked our approach using synthetic measurements and a real 4D flow MRI scan. Our optimized SIREN architecture outperformed state-of-the-art techniques, producing denoised and super-resolved velocity fields from clinical data. Our approach is quick to execute and straightforward to implement for novel cases, achieving 4D super-resolution.

eess.IV↗

arXiv2023

A Deep Learning-Based Fully Automated Pipeline for Regurgitant Mitral Valve Anatomy Analysis From 3D Echocardiography

Three-dimensional transesophageal echocardiography (3DTEE) is the recommended imaging technique for the assessment of mitral valve (MV) morphology and lesions in case of mitral regurgitation (MR) requiring surgical or transcatheter repair. Such assessment is key to thorough intervention planning and to intraprocedural guidance. However, it requires segmentation from 3DTEE images, which is timeconsuming, operator-dependent, and often merely qualitative. In the present work, a novel workflow to quantify the patient-specific MV geometry from 3DTEE is proposed. The developed approach relies on a 3D multi-decoder residual convolutional neural network (CNN) with a U-Net architecture for multi-class segmentation of MV annulus and leaflets. The CNN was trained and tested on a dataset comprising 55 3DTEE examinations of MR-affected patients. After training, the CNN is embedded into a fully automatic, and hence fully repeatable, pipeline that refines the predicted segmentation, detects MV anatomical landmarks and quantifies MV morphology. The trained 3D CNN achieves an average Dice score of $0.82 \pm 0.06$, mean surface distance of $0.43 \pm 0.14$ mm and 95% Hausdorff Distance (HD) of $3.57 \pm 1.56$ mm before segmentation refinement, outperforming a state-of-the-art baseline residual U-Net architecture, and provides an unprecedented multi-class segmentation of the annulus, anterior and posterior leaflet. The automatic 3D linear morphological measurements of the annulus and leaflets, specifically diameters and lengths, exhibit differences of less than 1.45 mm when compared to ground truth values. These measurements also demonstrate strong overall agreement with analyses conducted by semi-automated commercial software. The whole process requires minimal user interaction and requires approximately 15 seconds

cs.CV↗

arXiv2023

A CT-based deep learning system for automatic assessment of aortic root morphology for TAVI planning

Accurate planning of transcatheter aortic implantation (TAVI) is important to minimize complications, and it requires anatomic evaluation of the aortic root (AR), commonly done through 3D computed tomography (CT) image analysis. Currently, there is no standard automated solution for this process. Two convolutional neural networks (CNNs) with 3D U-Net architectures (model 1 and model 2) were trained on 310 CT scans for AR analysis. Model 1 performed AR segmentation and model 2 identified the aortic annulus and sinotubular junction (STJ) contours. Results were validated against manual measurements of 178 TAVI candidates. After training, the two models were integrated into a fully automated pipeline for geometric analysis of the AR. The trained CNNs effectively segmented the AR, annulus and STJ, resulting in mean Dice scores of 0.93 for the AR, and mean surface distances of 1.16 mm and 1.30 mm for the annulus and STJ, respectively. Automatic measurements were in good agreement with manual annotations, yielding annulus diameters that differed by 0.52 [-2.96, 4.00] mm (bias and 95% limits of agreement for manual minus algorithm). Evaluating the area-derived diameter, bias and limits of agreement were 0.07 [-0.25, 0.39] mm. STJ and sinuses diameters computed by the automatic method yielded differences of 0.16 [-2.03, 2.34] and 0.1 [-2.93, 3.13] mm, respectively. The proposed tool is a fully automatic solution to quantify morphological biomarkers for pre-TAVI planning. The method was validated against manual annotation from clinical experts and showed to be quick and effective in assessing AR anatomy, with potential for time and cost savings.

q-bio.QM↗

arXiv2022

Data-driven generation of 4D velocity profiles in the aneurysmal ascending aorta

Numerical simulations of blood flow are a valuable tool to investigate the pathophysiology of ascending thoracic aortic aneurysms (ATAA). To accurately reproduce hemodynamics, computational fluid dynamics (CFD) models must employ realistic inflow boundary conditions (BCs). However, the limited availability of in vivo velocity measurements still makes researchers resort to idealized BCs. In this study we generated and thoroughly characterized a large dataset of synthetic 4D aortic velocity profiles suitable to be used as BCs for CFD simulations. 4D flow MRI scans of 30 subjects with ATAA were processed to extract cross-sectional planes along the ascending aorta, ensuring spatial alignment among all planes and interpolating all velocity fields to a reference configuration. Velocity profiles of the clinical cohort were extensively characterized by computing flow morphology descriptors of both spatial and temporal features. By exploiting principal component analysis (PCA), a statistical shape model (SSM) of 4D aortic velocity profiles was built and a dataset of 437 synthetic cases with realistic properties was generated. Comparison between clinical and synthetic datasets showed that the synthetic data presented similar characteristics as the clinical population in terms of key morphological parameters. The average velocity profile qualitatively resembled a parabolic-shaped profile, but was quantitatively characterized by more complex flow patterns which an idealized profile would not replicate. Statistically significant correlations were found between PCA principal modes of variation and flow descriptors. We built a data-driven generative model of 4D aortic velocity profiles, suitable to be used in computational studies of blood flow. The proposed software system also allows to map any of the generated velocity profiles to the inlet plane of any virtual subject given its coordinate set.

q-bio.TO↗

arXiv2017

Simulation of left ventricle fluid dynamics with mitral regurgitation from magnetic resonance images with fictitious elastic structure regularization

Computer modeling can provide quantitative insight into cardiac fluid dynamics phenomena that are not evident from standard imaging tools. We propose a new approach to modeling left ventricle fluid dynamics based on an image-driven model-based description of ventricular motion. In this approach, the end-diastolic geometry and time-dependent deformation of the left ventricle cavity are obtained from cardiac magnetic resonance images and a fictitious elastic structure is used to impose the contractile behavior of the left ventricle. This allows seamless treatment of the isovolumic phases. Besides the ventricular motion, the intracavitary fluid dynamics is controlled by the mitral valve. Three different mitral valve models are included in the simulation: an idealized diode (with or without regurgitation) and a lumped parameter model accounting for the opening dynamics of the valve and including regurgitation.

physics.med-ph↗