arXiv subjects

Andreas Holzinger

Publications and source records attributed to Andreas Holzinger.

35 records · Page 2Linked to original sources

arXiv2021

Deep ROC Analysis and AUC as Balanced Average Accuracy to Improve Model Selection, Understanding and Interpretation

Optimal performance is critical for decision-making tasks from medicine to autonomous driving, however common performance measures may be too general or too specific. For binary classifiers, diagnostic tests or prognosis at a timepoint, measures such as the area under the receiver operating characteristic curve, or the area under the precision recall curve, are too general because they include unrealistic decision thresholds. On the other hand, measures such as accuracy, sensitivity or the F1 score are measures at a single threshold that reflect an individual single probability or predicted risk, rather than a range of individuals or risk. We propose a method in between, deep ROC analysis, that examines groups of probabilities or predicted risks for more insightful analysis. We translate esoteric measures into familiar terms: AUC and the normalized concordant partial AUC are balanced average accuracy (a new finding); the normalized partial AUC is average sensitivity; and the normalized horizontal partial AUC is average specificity. Along with post-test measures, we provide a method that can improve model selection in some cases and provide interpretation and assurance for patients in each risk group. We demonstrate deep ROC analysis in two case studies and provide a toolkit in Python.

stat.ME↗

arXiv2021

KANDINSKYPatterns -- An experimental exploration environment for Pattern Analysis and Machine Intelligence

Machine intelligence is very successful at standard recognition tasks when having high-quality training data. There is still a significant gap between machine-level pattern recognition and human-level concept learning. Humans can learn under uncertainty from only a few examples and generalize these concepts to solve new problems. The growing interest in explainable machine intelligence, requires experimental environments and diagnostic tests to analyze weaknesses in existing approaches to drive progress in the field. In this paper, we discuss existing diagnostic tests and test data sets such as CLEVR, CLEVERER, CLOSURE, CURI, Bongard-LOGO, V-PROM, and present our own experimental environment: The KANDINSKYPatterns, named after the Russian artist Wassily Kandinksy, who made theoretical contributions to compositivity, i.e. that all perceptions consist of geometrically elementary individual components. This was experimentally proven by Hubel &Wiesel in the 1960s and became the basis for machine learning approaches such as the Neocognitron and the even later Deep Learning. While KANDINSKYPatterns have computationally controllable properties on the one hand, bringing ground truth, they are also easily distinguishable by human observers, i.e., controlled patterns can be described by both humans and algorithms, making them another important contribution to international research in machine intelligence.

cs.AI↗

arXiv2020

Predicting Prostate Cancer-Specific Mortality with A.I.-based Gleason Grading

Gleason grading of prostate cancer is an important prognostic factor but suffers from poor reproducibility, particularly among non-subspecialist pathologists. Although artificial intelligence (A.I.) tools have demonstrated Gleason grading on-par with expert pathologists, it remains an open question whether A.I. grading translates to better prognostication. In this study, we developed a system to predict prostate-cancer specific mortality via A.I.-based Gleason grading and subsequently evaluated its ability to risk-stratify patients on an independent retrospective cohort of 2,807 prostatectomy cases from a single European center with 5-25 years of follow-up (median: 13, interquartile range 9-17). The A.I.'s risk scores produced a C-index of 0.84 (95%CI 0.80-0.87) for prostate cancer-specific mortality. Upon discretizing these risk scores into risk groups analogous to pathologist Grade Groups (GG), the A.I. had a C-index of 0.82 (95%CI 0.78-0.85). On the subset of cases with a GG in the original pathology report (n=1,517), the A.I.'s C-indices were 0.87 and 0.85 for continuous and discrete grading, respectively, compared to 0.79 (95%CI 0.71-0.86) for GG obtained from the reports. These represent improvements of 0.08 (95%CI 0.01-0.15) and 0.07 (95%CI 0.00-0.14) respectively. Our results suggest that A.I.-based Gleason grading can lead to effective risk-stratification and warrants further evaluation for improving disease management.

cs.CV↗

arXiv2020

Privacy-preserving Artificial Intelligence Techniques in Biomedicine

Artificial intelligence (AI) has been successfully applied in numerous scientific domains. In biomedicine, AI has already shown tremendous potential, e.g. in the interpretation of next-generation sequencing data and in the design of clinical decision support systems. However, training an AI model on sensitive data raises concerns about the privacy of individual participants. For example, summary statistics of a genome-wide association study can be used to determine the presence or absence of an individual in a given dataset. This considerable privacy risk has led to restrictions in accessing genomic and other biomedical data, which is detrimental for collaborative research and impedes scientific progress. Hence, there has been a substantial effort to develop AI methods that can learn from sensitive data while protecting individuals' privacy. This paper provides a structured overview of recent advances in privacy-preserving AI techniques in biomedicine. It places the most important state-of-the-art approaches within a unified taxonomy and discusses their strengths, limitations, and open problems. As the most promising direction, we suggest combining federated machine learning as a more scalable approach with other additional privacy preserving techniques. This would allow to merge the advantages to provide privacy guarantees in a distributed way for biomedical applications. Nonetheless, more research is necessary as hybrid approaches pose new challenges such as additional network or computation overhead.

cs.CR↗

arXiv2019

Measuring the Quality of Explanations: The System Causability Scale (SCS). Comparing Human and Machine Explanations

Recent success in Artificial Intelligence (AI) and Machine Learning (ML) allow problem solving automatically without any human intervention. Autonomous approaches can be very convenient. However, in certain domains, e.g., in the medical domain, it is necessary to enable a domain expert to understand, why an algorithm came up with a certain result. Consequently, the field of Explainable AI (xAI) rapidly gained interest worldwide in various domains, particularly in medicine. Explainable AI studies transparency and traceability of opaque AI/ML and there are already a huge variety of methods. For example with layer-wise relevance propagation relevant parts of inputs to, and representations in, a neural network which caused a result, can be highlighted. This is a first important step to ensure that end users, e.g., medical professionals, assume responsibility for decision making with AI/ML and of interest to professionals and regulators. Interactive ML adds the component of human expertise to AI/ML processes by enabling them to re-enact and retrace AI/ML results, e.g. let them check it for plausibility. This requires new human-AI interfaces for explainable AI. In order to build effective and efficient interactive human-AI interfaces we have to deal with the question of how to evaluate the quality of explanations given by an explainable AI system. In this paper we introduce our System Causability Scale (SCS) to measure the quality of explanations. It is based on our notion of Causability (Holzinger et al., 2019) combined with concepts adapted from a widely accepted usability scale.

cs.AI↗

arXiv2019

Performing Arithmetic Using a Neural Network Trained on Digit Permutation Pairs

In this paper a neural network is trained to perform simple arithmetic using images of concatenated handwritten digit pairs. A convolutional neural network was trained with images consisting of two side-by-side handwritten digits, where the image's label is the summation of the two digits contained in the combined image. Crucially, the network was tested on permutation pairs that were not present during training in an effort to see if the network could learn the task of addition, as opposed to simply mapping images to labels. A dataset was generated for all possible permutation pairs of length 2 for the digits 0-9 using MNIST as a basis for the images, with one thousand samples generated for each permutation pair. For testing the network, samples generated from previously unseen permutation pairs were fed into the trained network, and its predictions measured. Results were encouraging, with the network achieving an accuracy of over 90% on some permutation train/test splits. This suggests that the network learned at first digit recognition, and subsequently the further task of addition based on the two recognised digits. As far as the authors are aware, no previous work has concentrated on learning a mathematical operation in this way.

cs.LG↗

arXiv2019

Patch augmentation: Towards efficient decision boundaries for neural networks

In this paper we propose a new augmentation technique, called patch augmentation, that, in our experiments, improves model accuracy and makes networks more robust to adversarial attacks. In brief, this data-independent approach creates new image data based on image/label pairs, where a patch from one of the two images in the pair is superimposed on to the other image, creating a new augmented sample. The new image's label is a linear combination of the image pair's corresponding labels. Initial experiments show a several percentage point increase in accuracy on CIFAR-10, from a baseline of approximately 81% to 89%. CIFAR-100 sees larger improvements still, from a baseline of 52% to 68% accuracy. Networks trained using patch augmentation are also more robust to adversarial attacks, which we demonstrate using the Fast Gradient Sign Method.

cs.CV↗

arXiv2019

Kandinsky Patterns

Kandinsky Figures and Kandinsky Patterns are mathematically describable, simple self-contained hence controllable test data sets for the development, validation and training of explainability in artificial intelligence. Whilst Kandinsky Patterns have these computationally manageable properties, they are at the same time easily distinguishable from human observers. Consequently, controlled patterns can be described by both humans and computers. We define a Kandinsky Pattern as a set of Kandinsky Figures, where for each figure an "infallible authority" defines that the figure belongs to the Kandinsky Pattern. With this simple principle we build training and validation data sets for automatic interpretability and context learning. In this paper we describe the basic idea and some underlying principles of Kandinsky Patterns and provide a Github repository to invite the international machine learning research community to a challenge to experiment with our Kandinsky Patterns to expand and thus make progress in the field of explainable AI and to contribute to the upcoming field of explainability and causability.

cs.AI↗

arXiv2018

Ambient Assisted Living technologies from the perspectives of older people and professionals

Ambient Assisted Living (AAL) and Ambient Intelligence technologies are providing support to older people in living an independent and confident life by developing innovative ICT-based products, services, and systems. Despite significant advancement in AAL technologies and smart systems, they have still not found the way into the nursing home of the older people. The reasons are manifold. On one hand, the development of such systems lack in addressing the requirements of the older people and caregivers of the organization and the other is the unwillingness of the older people to make use of assistive systems. A qualitative study was performed at a nursing home to understand the needs and requirements of the residents and caregivers and their perspectives about the existing AAL technologies.

cs.CY↗

arXiv2018

Human Activity Recognition using Recurrent Neural Networks

Human activity recognition using smart home sensors is one of the bases of ubiquitous computing in smart environments and a topic undergoing intense research in the field of ambient assisted living. The increasingly large amount of data sets calls for machine learning methods. In this paper, we introduce a deep learning model that learns to classify human activities without using any prior knowledge. For this purpose, a Long Short Term Memory (LSTM) Recurrent Neural Network was applied to three real world smart home datasets. The results of these experiments show that the proposed approach outperforms the existing ones in terms of accuracy and performance.

cs.NE↗

arXiv2018

A Deep Learning Approach for Privacy Preservation in Assisted Living

In the era of Internet of Things (IoT) technologies the potential for privacy invasion is becoming a major concern especially in regards to healthcare data and Ambient Assisted Living (AAL) environments. Systems that offer AAL technologies make extensive use of personal data in order to provide services that are context-aware and personalized. This makes privacy preservation a very important issue especially since the users are not always aware of the privacy risks they could face. A lot of progress has been made in the deep learning field, however, there has been lack of research on privacy preservation of sensitive personal data with the use of deep learning. In this paper we focus on a Long Short Term Memory (LSTM) Encoder-Decoder, which is a principal component of deep learning, and propose a new encoding technique that allows the creation of different AAL data views, depending on the access level of the end user and the information they require access to. The efficiency and effectiveness of the proposed method are demonstrated with experiments on a simulated AAL dataset. Qualitatively, we show that the proposed model learns privacy operations such as disclosure, deletion and generalization and can perform encoding and decoding of the data with almost perfect recovery.

eess.SP↗

arXiv2018

The Need for Speed of AI Applications: Performance Comparison of Native vs. Browser-based Algorithm Implementations

AI applications pose increasing demands on performance, so it is not surprising that the era of client-side distributed software is becoming important. On top of many AI applications already using mobile hardware, and even browsers for computationally demanding AI applications, we are already witnessing the emergence of client-side (federated) machine learning algorithms, driven by the interests of large corporations and startups alike. Apart from mathematical and algorithmic concerns, this trend especially demands new levels of computational efficiency from client environments. Consequently, this paper deals with the question of state-of-the-art performance by presenting a comparison study between native code and different browser-based implementations: JavaScript, ASM.js as well as WebAssembly on a representative mix of algorithms. Our results show that current efforts in runtime optimization push the boundaries well towards (and even beyond) native binary performance. We analyze the results obtained and speculate on the reasons behind some surprises, rounding the paper off by outlining future possibilities as well as some of our own research efforts.

cs.AI↗

arXiv2017

What do we need to build explainable AI systems for the medical domain?

Artificial intelligence (AI) generally and machine learning (ML) specifically demonstrate impressive practical success in many different application domains, e.g. in autonomous driving, speech recognition, or recommender systems. Deep learning approaches, trained on extremely large data sets or using reinforcement learning methods have even exceeded human performance in visual tasks, particularly on playing games such as Atari, or mastering the game of Go. Even in the medical domain there are remarkable results. The central problem of such models is that they are regarded as black-box models and even if we understand the underlying mathematical principles, they lack an explicit declarative knowledge representation, hence have difficulty in generating the underlying explanatory structures. This calls for systems enabling to make decisions transparent, understandable and explainable. A huge motivation for our approach are rising legal and privacy aspects. The new European General Data Protection Regulation entering into force on May 25th 2018, will make black-box approaches difficult to use in business. This does not imply a ban on automatic learning approaches or an obligation to explain everything all the time, however, there must be a possibility to make the results re-traceable on demand. In this paper we outline some of our research topics in the context of the relatively new area of explainable-AI with a focus on the application in medicine, which is a very special domain. This is due to the fact that medical professionals are working mostly with distributed heterogeneous and complex sources of data. In this paper we concentrate on three sources: images, *omics data and text. We argue that research in explainable-AI would generally help to facilitate the implementation of AI/ML in the medical domain, and specifically help to facilitate transparency and trust.

cs.AI↗

arXiv2017

Towards the Augmented Pathologist: Challenges of Explainable-AI in Digital Pathology

Digital pathology is not only one of the most promising fields of diagnostic medicine, but at the same time a hot topic for fundamental research. Digital pathology is not just the transfer of histopathological slides into digital representations. The combination of different data sources (images, patient records, and *omics data) together with current advances in artificial intelligence/machine learning enable to make novel information accessible and quantifiable to a human expert, which is not yet available and not exploited in current medical settings. The grand goal is to reach a level of usable intelligence to understand the data in the context of an application task, thereby making machine decisions transparent, interpretable and explainable. The foundation of such an "augmented pathologist" needs an integrated approach: While machine learning algorithms require many thousands of training examples, a human expert is often confronted with only a few data points. Interestingly, humans can learn from such few examples and are able to instantly interpret complex patterns. Consequently, the grand goal is to combine the possibilities of artificial intelligence with human intelligence and to find a well-suited balance between them to enable what neither of them could do on their own. This can raise the quality of education, diagnosis, prognosis and prediction of cancer and other diseases. In this paper we describe some (incomplete) research issues which we believe should be addressed in an integrated and concerted effort for paving the way towards the augmented pathologist.

cs.AI↗

arXiv2017

Augmentor: An Image Augmentation Library for Machine Learning

The generation of artificial data based on existing observations, known as data augmentation, is a technique used in machine learning to improve model accuracy, generalisation, and to control overfitting. Augmentor is a software package, available in both Python and Julia versions, that provides a high level API for the expansion of image data using a stochastic, pipeline-based approach which effectively allows for images to be sampled from a distribution of augmented images at runtime. Augmentor provides methods for most standard augmentation practices as well as several advanced features such as label-preserving, randomised elastic distortions, and provides many helper functions for typical augmentation tasks used in machine learning.

cs.CV↗

arXiv2017

A glass-box interactive machine learning approach for solving NP-hard problems with the human-in-the-loop

The goal of Machine Learning to automatically learn from data, extract knowledge and to make decisions without any human intervention. Such automatic (aML) approaches show impressive success. Recent results even demonstrate intriguingly that deep learning applied for automatic classification of skin lesions is on par with the performance of dermatologists, yet outperforms the average. As human perception is inherently limited, such approaches can discover patterns, e.g. that two objects are similar, in arbitrarily high-dimensional spaces what no human is able to do. Humans can deal only with limited amounts of data, whilst big data is beneficial for aML; however, in health informatics, we are often confronted with a small number of data sets, where aML suffer of insufficient training samples and many problems are computationally hard. Here, interactive machine learning (iML) may be of help, where a human-in-the-loop contributes to reduce the complexity of NP-hard problems. A further motivation for iML is that standard black-box approaches lack transparency, hence do not foster trust and acceptance of ML among end-users. Rising legal and privacy aspects, e.g. with the new European General Data Protection Regulations, make black-box approaches difficult to use, because they often are not able to explain why a decision has been made. In this paper, we present some experiments to demonstrate the effectiveness of the human-in-the-loop approach, particularly in opening the black-box to a glass-box and thus enabling a human directly to interact with an learning algorithm. We selected the Ant Colony Optimization framework, and applied it on the Traveling Salesman Problem, which is a good example, due to its relevance for health informatics, e.g. for the study of protein folding. From studies of how humans extract so much from so little data, fundamental ML-research also may benefit.

cs.AI↗

arXiv2017

Review of Machine Learning Algorithms in Differential Expression Analysis

In biological research machine learning algorithms are part of nearly every analytical process. They are used to identify new insights into biological phenomena, interpret data, provide molecular diagnosis for diseases and develop personalized medicine that will enable future treatments of diseases. In this paper we (1) illustrate the importance of machine learning in the analysis of large scale sequencing data, (2) present an illustrative standardized workflow of the analysis process, (3) perform a Differential Expression (DE) analysis of a publicly available RNA sequencing (RNASeq) data set to demonstrate the capabilities of various algorithms at each step of the workflow, and (4) show a machine learning solution in improving the computing time, storage requirements, and minimize utilization of computer memory in analyses of RNA-Seq datasets. The source code of the analysis pipeline and associated scripts are presented in the paper appendix to allow replication of experiments.

stat.ML↗