arXiv subjects

Basudev Roy

Publications and source records attributed to Basudev Roy.

At least 19 recordsLinked to original sources

arXiv2026

NaBiF$_4$: Er$^{3+}$, Yb$^{3+}$ upconversion particle as a multi-functional bio-marker

Lanthanide-doped upconversion particles (UCPs) have revolutionized optical bioimaging platforms because of their excellent photostability, non-toxicity, and utilization of near-infrared excitation, which facilitates deep tissue penetration with negligible autofluorescence. However, it remains a challenge to achieve high-contrast and sub-diffraction imaging in noisy biological media, without using a high-power laser. Here, we report various protocols applied to bismuth-doped UCPs address some of these challenges. Compared to the photoluminescence (PL) emission of the regular Yttrium doped UCPs, we observe a three-fold increment in the quantum yield of the overall emission of bismuth-UCPs, and a four-fold increment, specifically, in red emission. Leveraging this advantage, we devise a protocol employing two infrared wavelengths, 975 nm and 1064 nm, to selectively control the PL emission. Interestingly, our results reveal two distinct regimes in which PL can be systematically quenched or enhanced, by adjusting the 975 nm laser power. We model the overall dynamics as a simplified stimulated emission depletion process involving three energy levels. In addition, the particle has a thickness under sub-diffraction, shows optical trapping ability, and potential of surface functionalization to enable specific conjugation with diverse biospecimens. These studies establish bismuth doped UCPs as an excellent candidate in accomplishing advanced biomarker operating with enhanced signal-to-noise ratio and sub-diffraction imaging capabilities.

physics.optics↗

arXiv2025

In-vivo femtonewton-sensing nanotribology of Tradescantia zebrina leaf cell inner surface using roll rotation detection

Accessing the properties of a plant cell interior non-invasively is difficult due to the presence of a cell wall. Nanoparticles larger than 5 nm cannot be readily phagocytosed inside the cell like animal cells. It is here that we realise that Tradescantia zebrina plant cells have prismatic forms of calcium oxalate crystals present inside them naturally. These crystals make a ready choice to study properties of the inner cell surface with the application of optical tweezers. Moreover, out-of-plane rotations in optical tweezers have begun to be explored only recently. The pitch rotation has been detected with high resolution and several applications are explored. In this work, we first study the stable configuration while trapped in linearly polarized optical tweezers and then explore the other out-of-plane configurations to detect the roll rotation at high resolution. Then a micro-rheological analysis is performed to obtain the frictional properties of the inner surface of the plasma membrane of the leaf cell. The size of the particle is about 5 $\mu$m along the diagonal, so that the contact length with the surface is about 200 nm. We measure a frictional force of 18.5 pN at a sensitivity of about 200 fN without averaging.

physics.bio-ph↗

arXiv2025

A label-free sub-diffractive technique for 3D intracellular tomography using thermally induced convection currents

Conventionally, 3-dimensional cellular tomography can be done with light sheet or multi-angle observations. Recently, a new technique was introduced where the cell was rotated using convection currents to visualize the outer periphery (Liu et al., Nano Lett., 2023, 23, 5148). However, the work falls short of actually observing intracellular objects like organelles etc. In this manuscript, we modify the technique by relying on computer vision algorithm called Contrast Limited Adaptive Histogram Equalisation (CLAHE) to improve the contrast for better detection of intra-cellular points, and then use optical flow detection technique to extract the in-plane speed of the point. This then is used to extract the vertical location, knowing that at the bottom part of the sphere, the point would be moving in one direction, close to the center there would be much less motion, while in the top portion of the sphere, the point would be moving in the reverse direction than the bottom. The velocity allows the exact localisation of the point in the vertical direction. This process allows for sub-diffractive intracellular tomography. This technique can further allow high-resolution detection of fluorescent molecules inside the cell also, when combined with convective flows.

physics.optics↗

arXiv2025

Intracellular phagosome shell is rigid enough to transfer outside torque to the inner spherical particle

Intracellular phagosomes have a lipid bilayer encapsulated fluidic shell outside the particle, on the outer side of which, molecular motors are attached. An optically trapped spherical birefringent particle phagosome provides an ideal platform to probe fluidity of the shell, as the inner particle is optically confined both in translation and in rotation. Using a recently reported method to calibrate the translation and pitch rotations - yielding a spatial resolution of about 2 nm and angular resolution of 0.1 degrees - we report novel roto-translational coupled dynamics. We also suggest a new technique where we explore the correlation between the translation and pitch rotation to study extent of activity. Given that a spherical birefringent particle phagosome is almost a sphere, the fact that it turns due to the activity of the motors is not obvious, even implying high rigidity of shell. Applying a minimal model for the roto-translational coupling, we further show that this coupling manifests itself as sustained fluxes in phase space, a signature of broken detailed balance.

physics.bio-ph↗

arXiv2023

Giant conductance of PSS:PEDOT micro-surfaces induced by microbubble lithography

We provide direct evidence of the effects of interface engineering of various substrates by Microbubble lithography (MBL). We choose a model organic plastic (or polymer) poly(3,4-ethylenedioxythiophene) polystyrene sulfonate (PEDOT:PSS), with conductivity of 140 S/cm, as a representative organic system to showcase our technique. Thus, we fabricate permanent patterns of PEDOT:PSS on glass, followed by a flexible PDMS substrate, and observe conductivity enhancement of 5 times on the former (694 S/cm), and 20 times (2844 S/cm) on the latter, without the use of external doping agents or invasive chemical treatment. Probing the patterned interface, we observe that MBL is able to tune the conformational states of PEDOT:PSS from coils in the pristine form, to extended coils on glass, and almost linear structures in PDMS due to its more malleable liquid-like interface. This results in higher ordering and vanishing grain boundaries leading to the highest conductivity of PEDOT:PSS on PDMS substrates.

physics.chem-ph↗

arXiv2023

Towards Stirling engine using an optically confined particle subjected to asymmetric temperature profile

The realization of microscopic heat engines has gained a surge of research interest in statistical physics, soft matter, and biological physics. A typical microscopic heat engine employs a colloidal particle trapped in a confining potential, which is modulated in time to mimic the cycle operations. Here, we use a lanthanide-doped upconverting particle (UCP) suspended in a passive aqueous bath, which is highly absorptive at 975 nm and converts NIR photons to visible, as the working substance of the engine. When a single UCP is optically trapped with a 975 nm laser, it behaves like an active particle by executing motion subjected to an asymmetric temperature profile along the direction of propagation of the laser. The strong absorption of 975 nm light by the particle introduces a temperature gradient and results in significant thermophoretic diffusion along the temperature gradient. However, the activity of the particle vanishes when the trapping wavelength is switched to 1064 nm. We carefully regulate the wavelength-dependent activity of the particle to engineer all four cycles of a Stirling engine by using a combination of 1064 nm and 975 nm wavelengths. Since the motion of the particle is stochastic, the work done on the particle due to the stiffness modulation per cycle is random. We provide statistical estimation for this work averaged over 5 cycles which can be extended towards several cycles to make a Stirling engine. Our experiment proposes a robust set-up to systematically harness temperature which is a crucial factor behind building microscopic engines.

cond-mat.stat-mech↗

arXiv2022

Roadmap for Optical Tweezers

Optical tweezers are tools made of light that enable contactless pushing, trapping, and manipulation of objects ranging from atoms to space light sails. Since the pioneering work by Arthur Ashkin in the 1970s, optical tweezers have evolved into sophisticated instruments and have been employed in a broad range of applications in life sciences, physics, and engineering. These include accurate force and torque measurement at the femtonewton level, microrheology of complex fluids, single micro- and nanoparticle spectroscopy, single-cell analysis, and statistical-physics experiments. This roadmap provides insights into current investigations involving optical forces and optical tweezers from their theoretical foundations to designs and setups. It also offers perspectives for applications to a wide range of research fields, from biophysics to space exploration.

physics.optics↗

arXiv2022

Simultaneous optical trapping and magnetic micromanipulation of ferromagnetic iron-doped upconversion microparticles in six degrees of freedom

Optical trapping of magnetic Fe-oxide particles is notoriously difficult due to their high refractive indices, not to mention high absorptivity at the trapping infra-red wavelengths. We synthesize Fe co-doped NaYF4:Yb,Er ferromagnetic upconversion particles that not only have refractive indices conducive for optical trapping, but also heat less than Haematite particles at off-resonant wavelengths. These particles are hexagonal shaped with dimensions of the order of 3 micrometer and also bear high coercivity of 20 mT and saturation magnetisation of 1 Am^2/kg. This enables simultaneous use of optical trapping and magnetic forces to generate micro-manipulation in all the six degrees of freedom of a rigid body. We also show that these particles heat significantly when illuminated on absorption resonance at 975 nm while emitting visible light with possible implications for fluorescence microscopy and photothermal therapy of cancer cells.

physics.optics↗

arXiv2020

Detection of sub-degree fluctuations of the local cellmembrane slope using optical tweezers

Normal thermal fluctuations of the cell membrane have been studied extensively using high resolution microscopy and focused light, particularly at the peripheral regions of a cell. We use a single probe particle attached non-specifically to the cell-membrane to determine that the power spectral density is proportional to (frequency)^(-1.66) in the range of 5 Hz to 1 kHz. We also use a new technique to simultaneously ascertain the slope fluctuations of the membrane by relying upon the determination of pitch motion of the birefringent probe particle trapped in linearly polarized optical tweezers. In the process, we also develop the technique to identify pitch rotation to a high resolu-tion using optical tweezers. We find that the power spectrum of slope fluctuations is proportional to 1/(frequency), which we also explain theoretically. We find that we can extract parameters like bending rigidity directly from the coefficient of the power spectrum particularly at high frequencies,instead of being convoluted with other parameters, thereby improving the accuracy of estimation.We anticipate this technique for determination of the pitch angle in spherical particles to high resolution as a starting point for many interesting studies using the optical tweezers

physics.bio-ph↗

arXiv2020

Pitch-rotational manipulation of single cells and particles using single-beam thermo-optical tweezers

3D pitch rotation of microparticles and cells assumes importance in a wide variety of applications in biology, physics, chemistry and medicine. Applications such as cell imaging and injection benefit from pitch-rotational manipulation. Generation of such motion in single beam optical tweezers has remained elusive due to complicacies of generating high enough ellipticity perpendicular to the direction of propagation. Further, trapping an extended object at two locations can only generate partial pitch motion by moving one of the foci in the axial direction. Here, we use hexagonal-shaped upconverting particles and single cells trapped close to a gold-coated glass cover slip in a sample chamber to generate complete 360 degree and continuous pitch motion even with a single optical tweezers beam. The tweezers beam passing through the gold surface is partially absorbed and generates a hot-spot to produce circulatory convective flows in the vicinity which rotates the objects. The rotation rate can be controlled by the intensity of the laser light and the thickness of the gold layer. Thus such a simple configuration can turn the particle in the pitch sense. The circulatory flows in this technique have a diameter of about 5 $\mu$m which is smaller than those reported using acousto-fluidic techniques.

cond-mat.soft↗

arXiv2019

In-vivo characterization of optically trapped Brownianprobes at a glance

Calibration of optically trapped particles in-vivo has been complicated given the frequency dependence and spatial inhomogeneity of the cytoplasmic viscosity, and the requirement of accurate knowledge of the medium refractive index. Further, it has been demonstrated that the medium viscosity is dependent upon the measurement probe leading to reliability issues for measurements with even micrometer sized particles. Here, we employ a recent extension of Jeffery's model of viscoelasticity in the microscopic domain to fit the passive motional power spectra of micrometer-sized optically trapped particles embedded in a viscoelastic medium. We find excellent agreement between the 0 Hz viscosity in MCF7 cells and the typical values of viscosity in literature, between 2 to 16 mPa sec expected for the typical concentration of proteins inside the cytoplasmic solvent. This bypasses the dependence on probe size by relying upon small thermal displacements. Our measurements of the relaxation time also match values reported with magnetic tweezers, at about 0.1 sec. Finally, we calibrate the optical tweezers and demonstrate the efficacy of the technique to the study of in-vivo translational motion.

physics.bio-ph↗

arXiv2019

Self-assembly and complex manipulation of colloidal mesoscopic particles by active thermocapillary stress

We demonstrate that the active thermocapillary stresses induced by multiple microbubbles offer simple routes to directed self-assembly and complex but controllable micromanipulation of mesoscopic colloidal particles embedded in a liquid. The microbubbles are nucleated on a liquid-glass interface using optical tweezers. The flow around a single bubble causes self-assembly of the particles in rings at the bubble-base, while an asymmetric temperature profile generated across the bubble interface breaks the azimuthal symmetry of the flow, and induces simultaneous accumulation and repulsion of particles at different axial planes with respect to the bubble. The flows due to two adjacent bubbles lead to more diverse effects including the sorting of particles, and to local vorticity that causes radial and axial rotation of the particles - the latter being obtained for the first time using optical tweezers. The sorting is enabled by nucleating the bubbles on spatially discrete temperature profiles, while the vorticity is generated by nucleating them in the presence of a temperature gradient which once again causes a strong symmetry-breaking in the azimuthal flow. The flow profiles obtained in the experiments are explained by analytical solutions or qualitative explanations of the associated thermocapillary problem employing the Stokes and heat equations.

physics.flu-dyn↗

arXiv2019

Detection of self-generated nanowaves on the interface of an evaporating sessile water droplet

Evaporating sessile droplets have been known to exhibit oscillations on the air-liquid interface. These are generally over millimeter scales. Using a novel approach, we are able to measure surface height changes of 500 nm amplitude using optical trapping of a set of microscopic particles at the interface, particularly when the vertical thickness of the droplet reduces to less than 50 $\mu$m. We find that at the later stages of the droplet evaporation, particularly when the convection currents become large, the top air-water interface starts to spontaneously oscillate vertically as a function of time in consistency with predictions. We also detect travelling wave trains moving in the azimuthal direction of the drop surface which are consistent with hydrothermal waves at a different combination of Reynolds, Prandtl and Evaporation than previously observed. This is the first time that wave-trains have been observed in water, being extremely challenging to detect both interferometrically and with infra-red cameras. We also find that such waves apply a force parallel to the interface along the propagation direction.

physics.optics↗

arXiv2018

Study of adhesivity of surfaces using rotational optical tweezers

Optical tweezers are powerful tools for high resolution study of surface properties. Such experiments are traditionally performed by studying the active or the brownian fluctuation of trapped particles in the X, Y, Z direction. Here we find that employing the fourth dimension, rotation, allows for sensitive and fast probing of the surface. Optical tweezers are capable of rotating trapped birefringent microparticles when applied with circularly polarized light, thus called the Rotational Optical Tweezers. When the trapped birefringent microparticle is far enough away from the surface, the rotation rate is dependent only on the laser power. However, we find that if one traps close to a surface, the rotation rate goes to zero even at finite tweezers laser powers for some specific type of substrates. We suspect this to be due to interaction between the substrate and the birefringent particle, keeping in mind that the hydrodynamic drag for this mode of rotation cannot increase beyond 1.2 times the drag away from the surface. We use this to probe some surfaces and find that there is no binding for hydrophobic ones but hydrophilic ones particularly tend to show a power threshold beyond which the birefringent particle starts rotating. We calculate that the threshold energy of the tweezers is consistent with the Van der Waals potential energy, when the mode of interaction with the surface is purely physical. We also find that for chitosan, the mode of interaction is possibly different from Van der Waals. We place the particle on the threshold and observe stick-slip kind of rotational behaviour.

physics.optics↗

arXiv2018

Microscopic approach to understand Brownian dynamics in viscoelastic fluid

We present an entirely microscopic formulation of viscoleasticity of a fluid starting from the microscopic Stokes-Oldroyd B Model assuming instantaneous hydrodynamic friction, and show that linearization leads to a form for the frequency dependent viscosity that can be directly applied to the Langevin equation. Interestingly, the calculated expression of viscosity can be directly mapped to the Jeffreys' model which is essentially macroscopic in nature with the bulk viscoelasticity of the fluid being characterized by a complex elastic modulus G(\omega). Further, we demonstrate that the concerned Green's function is same as that in an incompressible, low Reynold's number Newtonian fluid with the simple incorporation of frequency dependence in the viscosity term. We proceed to evaluate the trajectory of a free Brownian particle in a viscoelastic environment using our formalism and calculate parameters such as the power spectral density, the autocorrelation function and the mean-square displacement, which we then extend to the particle confined in a harmonic potential in the fluid.

physics.flu-dyn↗

arXiv2017

Direct verification of the fluctuation-dissipation relation in viscously coupled oscillators

The fluctuation-dissipation relation, a central result in non-equilibrium statistical physics, relates equilibrium fluctuations in a system to its linear response to external forces. Here we provide a direct experimental verification of this relation for viscously coupled oscillators, as realized by a pair of optically trapped colloidal particles. A theoretical analysis, in which interactions mediated by slow viscous flow are represented by non-local friction tensors, matches experimental results and reveals a frequency maximum in the amplitude of the mutual response which is a sensitive function of the trap stiffnesses and the friction tensors. This allows for its location and width to be tuned and suggests the utility of the trap setup for accurate two-point microrheology.

cond-mat.soft↗

arXiv2014

Simultaneous detection of rotational and translational motion in optical tweezers by measurement of backscattered intensity

We describe a simple yet powerful technique of simultaneously measuring both translational and rotational motion of mesoscopic particles in optical tweezers by measuring the backscattered intensity on a quadrant photodiode (QPD). While the measurement of translational motion by taking the difference of the backscattered intensity incident on adjacent quadrants of a QPD is well-known, we demonstrate that rotational motion can be measured very precisely by taking the difference between the diagonal quadrants. The latter measurement eliminates the translational component entirely, and leads to a detection sensitivity of around 50 mdeg at S/N of 2 for angular motion of a driven micro-rod. The technique is also able to resolve the translational and rotational Brownian motion components of the micro-rod in an unperturbed trap, and can be very useful in measuring translation-rotation coupling of micro-objects induced by hydrodynamic interactions.

physics.optics↗

arXiv2013

Enhanced topological phase and spin Hall shifts in an optical trap

The spin orbit interaction (SOI) of light has been in the focus in recent times because of fundamental consequences and potential applications in diverse systems ranging from inhomogeneous anisotropic media to engineered plasmonics and metamaterial strutures. Here we demonstrate perhaps one of the simplest means to realize SOI and the Spin Hall Shift (SHS) using a standard Gaussian TEM$_{00}$ beam in an optical trap. Our system exploits the versatility and interference generated in a stratified medium to control and manipulate SOI and transfer the resulting angular momentum to optically trapped micro-particles. We show that even such a simple setup can lead to an order of magnitude enhancement in the SHS compared to the sub-wavelength shifts typically obtained. Importantly, this leads to controlled rotation of mesoscopic particles using a fundamental Gaussian beam lacking any intrinsic angular momentum.

physics.optics↗