arXiv subjects

Carolyn Rose

Publications and source records attributed to Carolyn Rose.

31 records · Page 2Linked to original sources

arXiv2024

DocLens: Multi-aspect Fine-grained Evaluation for Medical Text Generation

Medical text generation aims to assist with administrative work and highlight salient information to support decision-making. To reflect the specific requirements of medical text, in this paper, we propose a set of metrics to evaluate the completeness, conciseness, and attribution of the generated text at a fine-grained level. The metrics can be computed by various types of evaluators including instruction-following (both proprietary and open-source) and supervised entailment models. We demonstrate the effectiveness of the resulting framework, DocLens, with three evaluators on three tasks: clinical note generation, radiology report summarization, and patient question summarization. A comprehensive human study shows that DocLens exhibits substantially higher agreement with the judgments of medical experts than existing metrics. The results also highlight the need to improve open-source evaluators and suggest potential directions.

cs.CL↗

arXiv2024

CodeBenchGen: Creating Scalable Execution-based Code Generation Benchmarks

To adequately test modern code generation systems, evaluation benchmarks must execute and test the code generated by the system. However, these execution and testing requirements have largely limited benchmarks to settings where code is easily executable or has human-written tests. To facilitate evaluation of code generation systems across diverse scenarios, we present CodeBenchGen, a framework to create scalable execution-based benchmarks from naturally occurring code sources. Specifically, we leverage a large language model (LLM) to sandbox arbitrary pieces of code into evaluation examples, including test cases for execution-based evaluation. We illustrate the usefulness of our framework by creating a dataset, Exec-CSN, which includes 1,931 examples involving 293 libraries converted from code in 367 GitHub repositories taken from the Code- SearchNet dataset. To demonstrate the solvability of examples in Exec-CSN, we present a human study demonstrating that 81.3% of the examples can be solved by humans and 61% are rated as "requires effort to solve". We conduct code generation experiments on open-source and proprietary models and analyze the performance of both humans and models. We provide code and data at: https://github.com/yiqingxyq/CodeBenchGen.

cs.SE↗

arXiv2024

Distilling Multi-Scale Knowledge for Event Temporal Relation Extraction

Event Temporal Relation Extraction (ETRE) is paramount but challenging. Within a discourse, event pairs are situated at different distances or the so-called proximity bands. The temporal ordering communicated about event pairs where at more remote (i.e., ``long'') or less remote (i.e., ``short'') proximity bands are encoded differently. SOTA models have tended to perform well on events situated at either short or long proximity bands, but not both. Nonetheless, real-world, natural texts contain all types of temporal event-pairs. In this paper, we present MulCo: Distilling Multi-Scale Knowledge via Contrastive Learning, a knowledge co-distillation approach that shares knowledge across multiple event pair proximity bands to improve performance on all types of temporal datasets. Our experimental results show that MulCo successfully integrates linguistic cues pertaining to temporal reasoning across both short and long proximity bands and achieves new state-of-the-art results on several ETRE benchmark datasets.

cs.CL↗

arXiv2023

Linguistic representations for fewer-shot relation extraction across domains

Recent work has demonstrated the positive impact of incorporating linguistic representations as additional context and scaffolding on the in-domain performance of several NLP tasks. We extend this work by exploring the impact of linguistic representations on cross-domain performance in a few-shot transfer setting. An important question is whether linguistic representations enhance generalizability by providing features that function as cross-domain pivots. We focus on the task of relation extraction on three datasets of procedural text in two domains, cooking and materials science. Our approach augments a popular transformer-based architecture by alternately incorporating syntactic and semantic graphs constructed by freely available off-the-shelf tools. We examine their utility for enhancing generalization, and investigate whether earlier findings, e.g. that semantic representations can be more helpful than syntactic ones, extend to relation extraction in multiple domains. We find that while the inclusion of these graphs results in significantly higher performance in few-shot transfer, both types of graph exhibit roughly equivalent utility.

cs.CL↗

arXiv2022

MedFilter: Improving Extraction of Task-relevant Utterances from Doctor-Patient Conversations through Integration of Discourse Structure and Ontological Knowledge

Information extraction from conversational data is particularly challenging because the task-centric nature of conversation allows for effective communication of implicit information by humans, but is challenging for machines. The challenges may differ between utterances depending on the role of the speaker within the conversation, especially when relevant expertise is distributed asymmetrically across roles. Further, the challenges may also increase over the conversation as more shared context is built up through information communicated implicitly earlier in the dialogue. In this paper, we propose the novel modeling approach MedFilter, which addresses these insights in order to increase performance at identifying and categorizing task-relevant utterances, and in so doing, positively impacts performance at a downstream information extraction task. We evaluate this approach on a corpus of nearly 7,000 doctor-patient conversations where MedFilter is used to identify medically relevant contributions to the discussion (achieving a 10% improvement over SOTA baselines in terms of area under the PR curve). Identifying task-relevant utterances benefits downstream medical processing, achieving improvements of 15%, 105%, and 23% respectively for the extraction of symptoms, medications, and complaints.

cs.CL↗

arXiv2022

Adapting to the Long Tail: A Meta-Analysis of Transfer Learning Research for Language Understanding Tasks

Natural language understanding (NLU) has made massive progress driven by large benchmarks, but benchmarks often leave a long tail of infrequent phenomena underrepresented. We reflect on the question: have transfer learning methods sufficiently addressed the poor performance of benchmark-trained models on the long tail? We conceptualize the long tail using macro-level dimensions (e.g., underrepresented genres, topics, etc.), and perform a qualitative meta-analysis of 100 representative papers on transfer learning research for NLU. Our analysis asks three questions: (i) Which long tail dimensions do transfer learning studies target? (ii) Which properties of adaptation methods help improve performance on the long tail? (iii) Which methodological gaps have greatest negative impact on long tail performance? Our answers highlight major avenues for future research in transfer learning for the long tail. Lastly, using our meta-analysis framework, we perform a case study comparing the performance of various adaptation methods on clinical narratives, which provides interesting insights that may enable us to make progress along these future avenues.

cs.CL↗

arXiv2021

Improving Broad-Coverage Medical Entity Linking with Semantic Type Prediction and Large-Scale Datasets

Medical entity linking is the task of identifying and standardizing medical concepts referred to in an unstructured text. Most of the existing methods adopt a three-step approach of (1) detecting mentions, (2) generating a list of candidate concepts, and finally (3) picking the best concept among them. In this paper, we probe into alleviating the problem of overgeneration of candidate concepts in the candidate generation module, the most under-studied component of medical entity linking. For this, we present MedType, a fully modular system that prunes out irrelevant candidate concepts based on the predicted semantic type of an entity mention. We incorporate MedType into five off-the-shelf toolkits for medical entity linking and demonstrate that it consistently improves entity linking performance across several benchmark datasets. To address the dearth of annotated training data for medical entity linking, we present WikiMed and PubMedDS, two large-scale medical entity linking datasets, and demonstrate that pre-training MedType on these datasets further improves entity linking performance. We make our source code and datasets publicly available for medical entity linking research.

cs.CL↗

arXiv2021

STAGE: Tool for Automated Extraction of Semantic Time Cues to Enrich Neural Temporal Ordering Models

Despite achieving state-of-the-art accuracy on temporal ordering of events, neural models showcase significant gaps in performance. Our work seeks to fill one of these gaps by leveraging an under-explored dimension of textual semantics: rich semantic information provided by explicit textual time cues. We develop STAGE, a system that consists of a novel temporal framework and a parser that can automatically extract time cues and convert them into representations suitable for integration with neural models. We demonstrate the utility of extracted cues by integrating them with an event ordering model using a joint BiLSTM and ILP constraint architecture. We outline the functionality of the 3-part STAGE processing approach, and show two methods of integrating its representations with the BiLSTM-ILP model: (i) incorporating semantic cues as additional features, and (ii) generating new constraints from semantic cues to be enforced in the ILP. We demonstrate promising results on two event ordering datasets, and highlight important issues in semantic cue representation and integration for future research.

cs.CL↗

arXiv2021

Evaluating the Impact of a Hierarchical Discourse Representation on Entity Coreference Resolution Performance

Recent work on entity coreference resolution (CR) follows current trends in Deep Learning applied to embeddings and relatively simple task-related features. SOTA models do not make use of hierarchical representations of discourse structure. In this work, we leverage automatically constructed discourse parse trees within a neural approach and demonstrate a significant improvement on two benchmark entity coreference-resolution datasets. We explore how the impact varies depending upon the type of mention.

cs.CL↗

arXiv2020

Using Type Information to Improve Entity Coreference Resolution

Coreference resolution (CR) is an essential part of discourse analysis. Most recently, neural approaches have been proposed to improve over SOTA models from earlier paradigms. So far none of the published neural models leverage external semantic knowledge such as type information. This paper offers the first such model and evaluation, demonstrating modest gains in accuracy by introducing either gold standard or predicted types. In the proposed approach, type information serves both to (1) improve mention representation and (2) create a soft type consistency check between coreference candidate mentions. Our evaluation covers two different grain sizes of types over four different benchmark corpora.

cs.CL↗

arXiv2020

Adapting Event Extractors to Medical Data: Bridging the Covariate Shift

We tackle the task of adapting event extractors to new domains without labeled data, by aligning the marginal distributions of source and target domains. As a testbed, we create two new event extraction datasets using English texts from two medical domains: (i) clinical notes, and (ii) doctor-patient conversations. We test the efficacy of three marginal alignment techniques: (i) adversarial domain adaptation (ADA), (ii) domain adaptive fine-tuning (DAFT), and (iii) a novel instance weighting technique based on language model likelihood scores (LIW). LIW and DAFT improve over a no-transfer BERT baseline on both domains, but ADA only improves on clinical notes. Deeper analysis of performance under different types of shifts (e.g., lexical shift, semantic shift) reveals interesting variations among models. Our best-performing models reach F1 scores of 70.0 and 72.9 on notes and conversations respectively, using no labeled data from target domains.

cs.CL↗

arXiv2019

EQUATE: A Benchmark Evaluation Framework for Quantitative Reasoning in Natural Language Inference

Quantitative reasoning is a higher-order reasoning skill that any intelligent natural language understanding system can reasonably be expected to handle. We present EQUATE (Evaluating Quantitative Understanding Aptitude in Textual Entailment), a new framework for quantitative reasoning in textual entailment. We benchmark the performance of 9 published NLI models on EQUATE, and find that on average, state-of-the-art methods do not achieve an absolute improvement over a majority-class baseline, suggesting that they do not implicitly learn to reason with quantities. We establish a new baseline Q-REAS that manipulates quantities symbolically. In comparison to the best performing NLI model, it achieves success on numerical reasoning tests (+24.2%), but has limited verbal reasoning capabilities (-8.1%). We hope our evaluation framework will support the development of models of quantitative reasoning in language understanding.

cs.CL↗

arXiv2018

Stress Test Evaluation for Natural Language Inference

Natural language inference (NLI) is the task of determining if a natural language hypothesis can be inferred from a given premise in a justifiable manner. NLI was proposed as a benchmark task for natural language understanding. Existing models perform well at standard datasets for NLI, achieving impressive results across different genres of text. However, the extent to which these models understand the semantic content of sentences is unclear. In this work, we propose an evaluation methodology consisting of automatically constructed "stress tests" that allow us to examine whether systems have the ability to make real inferential decisions. Our evaluation of six sentence-encoder models on these stress tests reveals strengths and weaknesses of these models with respect to challenging linguistic phenomena, and suggests important directions for future work in this area.

cs.CL↗