arXiv subjects

Chien-Yu Lin

Publications and source records attributed to Chien-Yu Lin.

16 recordsLinked to original sources

arXiv2026

Agentic Discovery of Neural Architectures: AIRA-Compose and AIRA-Design

Toward recursive self-improvement, we investigate LLM agents autonomously designing foundation models beyond standard Transformers. We introduce a dual-framework approach: AIRA-Compose for high-level architecture search, and AIRA-Design for low-level mechanistic implementation. AIRA-Compose uses 11 agents to explore fundamental computational primitives under a 24-hour budget. Agents evaluate million-parameter candidates, extrapolating top designs to 350M, 1B, and 3B scales. This yields 14 architectures across two families: AIRAformers (Transformer-based) and AIRAhybrids (Transformer-Mamba). Pre-trained at 1B scale, these consistently outperform Llama 3.2 and Composer-found baselines. On downstream tasks, AIRAformer-D and AIRAhybrid-D improve accuracy by 2.4% and 3.8% over Llama 3.2. Furthermore, AIRA-Compose finds models with highly efficient scaling frontiers: AIRAformer-C scales 54% and 71% faster than Llama 3.2 and Composer's best Transformer, while AIRAhybrid-C outscales Nemotron-2 by 23% and Composer's best hybrid by 37%. AIRA-Design tasks 20 agents with writing novel attention mechanisms for long-range dependencies and high-performing training scripts. On the Long Range Arena benchmark, agent-designed architectures reach within 2.3% and 2.6% of human state-of-the-art on document matching and text classification. On the Autoresearch benchmark, Greedy Opus 4.5 achieves 0.968 validation bits-per-byte under a fixed time budget, surpassing the published minimum. Together, these frameworks show AI agents can autonomously discover architectures and algorithmic optimizations matching or surpassing hand-designed baselines. This establishes a powerful paradigm for discovering next-generation foundation models, marking a clear step toward recursive self-improvement.

cs.AI↗

arXiv2025

UniQL: Unified Quantization and Low-rank Compression for Adaptive Edge LLMs

Deploying large language models (LLMs) on mobile platforms faces significant challenges due to the limited memory and shared computational resources of the device. Resource availability may be an issue as it is directly impacted by the current device workload, adding to the uncertainty of model deployment. We introduce UniQL, a unified post-training quantization and low-rank compression framework with on-device configurable pruning rates for edge LLMs. UniQL is a general framework that integrates quantization and low-rank compression for Transformers, State Space Models (SSMs), and hybrid models to support diverse edge applications. In our proposed joint framework, we introduce an efficient structured weight-sorting method that speeds up computation by 20x, quantization-aware singular value decomposition (SVD) to minimize quantization errors, state-aware weight sorting for SSMs, and a fused rotary positional embedding (RoPE) kernel for pruned models. Our framework performs weight-sorting, fine-tuning, and quantization in the cloud in a single-pass workflow, while enabling on-device configurable pruning rates up to 35%. Our experiments show that quantized and pruned models achieve a memory reduction of 4x-5.7x and a token-throughput improvement of 2.7x-3.4x, maintaining accuracy within 5% of the original models at 15% pruning across Transformers (Llama3 and Qwen2.5), SSMs (Mamba2), and hybrid models (Nemotron-H and Bamba-v2). The code and quantized models are available at: https://github.com/enyac-group/UniQL.

cs.LG↗

arXiv2025

Hybrid Architectures for Language Models: Systematic Analysis and Design Insights

Recent progress in large language models demonstrates that hybrid architectures--combining self-attention mechanisms with structured state space models like Mamba--can achieve a compelling balance between modeling quality and computational efficiency, particularly for long-context tasks. While these hybrid models show promising performance, systematic comparisons of hybridization strategies and analyses on the key factors behind their effectiveness have not been clearly shared to the community. In this work, we present a holistic evaluation of hybrid architectures based on inter-layer (sequential) or intra-layer (parallel) fusion. We comprehensively evaluate these designs across multiple dimensions: language modeling and downstream task performance, long-context capabilities, scaling analysis, and training and inference efficiency. By investigating the core characteristics of their computational primitive, we identify the most critical elements for each hybridization strategy and further propose optimal design recipes for hybrid models. Our comprehensive analysis provides practical guidance and valuable insights for developing hybrid language models, facilitating the optimization of architectural configurations.

cs.CL↗

arXiv2025

Composer: A Search Framework for Hybrid Neural Architecture Design

Hybrid model architectures that combine computational primitives (e.g., Attention, MLP) in different ratios have shown promising performance beyond Transformers. Some studies have shown that different interleavings of primitives can affect model quality as well. However, prior works explore the hybrid model architecture design space manually. Due to the large design space and training costs, discovering hybrid models that combine key computational primitives for pre-training is challenging. In this work, we take a principled approach in designing a modular hybrid model architecture search framework -- Composer. Composer explores model architectures at a small scale and extrapolates the top-performing model architectures to a larger scale using our proposed scaling strategies. Using Composer, we discover new hybrid LLM architectures that outperform Llama 3.2. Compared to Llama 3.2 and previous state-of-the-art baselines, the new model architectures consistently reduce validation loss at parameter scales of 350M-3B and improve evaluation accuracy on the downstream tasks by up to 2.8-8.3% (1.1-3.1% on average) while improving both training and inference efficiency.

cs.LG↗

arXiv2025

xKV: Cross-Layer KV-Cache Compression via Aligned Singular Vector Extraction

Long-context Large Language Models (LLMs) enable powerful applications but incur high memory costs due to the key-value states (KV-Cache). Recent studies attempt to share KV-Cache across layers, but these approaches either require expensive pretraining or rely on per-token cross-layer cosine similarity that is often limited in practice. We show, via Centered Kernel Alignment (CKA), that the dominant singular vectors of KV-Cache are well aligned across layers. Motivated by this observation, we propose xKV, a post-training compression method that jointly factorizes grouped-layer KV-Cache into a shared low-rank subspace, substantially reducing KV-Cache memory. Across widely used LLMs, xKV achieves up to 8x KV-Cache compression while preserving accuracy on long-context tasks and in multi-turn settings. To further improve efficiency, we introduce Selective Reconstruction (SR) at decode time. Combined with SR, xKV achieves up to 4.23x end-to-end speedup over the full attention baseline, and surpasses notable baselines with 30% higher throughput under a similar accuracy level. Overall, xKV provides a plug-and-play approach to reduce both memory and latency for long-context LLM inference. Our code is publicly available at: https://github.com/abdelfattah-lab/xKV.

cs.CL↗

arXiv2025

TeleRAG: Efficient Retrieval-Augmented Generation Inference with Lookahead Retrieval

Retrieval-augmented generation (RAG) extends large language models (LLMs) with external data sources to enhance factual correctness and domain coverage. Modern RAG pipelines rely on large datastores, creating a significant system challenge: achieving high throughput and low latency is difficult, especially when GPU memory is limited. To address these challenges, we propose TeleRAG, an efficient inference system that reduces latency and improves throughput with minimal GPU memory requirements. The core innovation of TeleRAG is lookahead retrieval, a prefetching mechanism that predicts required data and transfers them from CPU to GPU in parallel with LLM generation. In addition, TeleRAG adopts a prefetching scheduler and a cache-aware scheduler to support efficient multi-GPU inference with minimal overhead. Evaluations show TeleRAG achieves up to a 1.53x average end-to-end latency reduction (single-query) and 1.83x higher average throughput (batched), as well as good scalability in throughput. This confirms the practical utility of TeleRAG for faster and more memory-efficient deployments of RAG applications.

cs.DC↗

arXiv2024

NanoFlow: Towards Optimal Large Language Model Serving Throughput

Large Language Models (LLMs) have resulted in a surging demand for planet-scale serving systems, where tens of thousands of GPUs continuously serve hundreds of millions of users. Consequently, throughput has emerged as a key metric that determines serving systems' performance. Due to large model sizes and memory-intensive self-attention, LLM serving has been commonly assumed to be memory-bound. Through a detailed analysis, we show that despite having memory-intensive components, end-to-end LLM serving is compute bound for most common workloads and LLMs. Alas, most existing serving engines fall short from optimal compute utilization, because the heterogeneous operations that comprise LLM serving--compute, memory, networking--are executed sequentially within a device. We propose NanoFlow, a novel serving framework that exploits intra-device parallelism, which overlaps the usage of heterogeneous resources within a single device. NanoFlow splits inputs into smaller nano-batches and duplicates operations to operate on each portion independently, enabling overlapping. NanoFlow automatically identifies the number, size, ordering, and GPU resource allocation of nano-batches to minimize the execution time, while considering the interference of concurrent operations. We evaluate NanoFlow's end-to-end serving throughput on several popular models such as LLaMA-2-70B, Mixtral 8x7B, LLaMA-3-8B, etc. With practical workloads, NanoFlow provides 1.91x throughput boost compared to state-of-the-art serving systems achieving 50% to 72% of optimal throughput across popular models.

cs.DC↗

arXiv2024

Palu: Compressing KV-Cache with Low-Rank Projection

Post-training KV-Cache compression methods typically either sample a subset of effectual tokens or quantize the data into lower numerical bit width. However, these methods cannot exploit redundancy in the hidden dimension of the KV tensors. This paper presents a hidden dimension compression approach called Palu, a KV-Cache compression framework that utilizes low-rank projection to reduce inference-time LLM memory usage. Palu decomposes the linear layers into low-rank matrices, caches compressed intermediate states, and reconstructs the full keys and values on the fly. To improve accuracy, compression rate, and efficiency, Palu further encompasses (1) a medium-grained low-rank decomposition scheme, (2) an efficient rank search algorithm, (3) low-rank-aware quantization compatibility enhancements, and (4) optimized GPU kernels with operators fusion. Extensive experiments with popular LLMs show that Palu compresses KV-Cache by 50% while maintaining strong accuracy and delivering up to 1.89x on the RoPE-based attention module. When combined with quantization, Palu's inherent quantization-friendly design yields small to negligible extra accuracy degradation while saving additional memory than quantization-only methods and achieving up to 2.91x speedup for the RoPE-based attention. Moreover, it maintains comparable or even better accuracy (up to 1.19 lower perplexity) compared to quantization-only methods. These results demonstrate Palu's superior capability to effectively address the efficiency and memory challenges of LLM inference posed by KV-Cache. Our code is publicly available at: https://github.com/shadowpa0327/Palu

cs.AI↗

arXiv2024

Efficient Encoder-Decoder Transformer Decoding for Decomposable Tasks

Transformer-based NLP models are powerful but have high computational costs that limit deployment. Finetuned encoder-decoder models are popular in specialized domains and can outperform larger more generalized decoder-only models, such as GPT-4. We introduce a new configuration for encoder-decoder models that improves efficiency on structured output and decomposable tasks where multiple outputs are required for a single shared input. Our method, prompt-in-decoder (PiD), encodes the input once and decodes the output in parallel, boosting both training and inference efficiency by avoiding duplicate input encoding and increasing the operational intensity (ratio of numbers of arithmetic operation to memory access) of decoding process by sharing the input key-value cache. We achieve computation reduction that roughly scales with the number of subtasks, gaining up to 4.6x speed-up over state-of-the-art models for dialogue state tracking, summarization, and question-answering tasks, with comparable or better performance.

cs.CL↗

arXiv2023

FastSR-NeRF: Improving NeRF Efficiency on Consumer Devices with A Simple Super-Resolution Pipeline

Super-resolution (SR) techniques have recently been proposed to upscale the outputs of neural radiance fields (NeRF) and generate high-quality images with enhanced inference speeds. However, existing NeRF+SR methods increase training overhead by using extra input features, loss functions, and/or expensive training procedures such as knowledge distillation. In this paper, we aim to leverage SR for efficiency gains without costly training or architectural changes. Specifically, we build a simple NeRF+SR pipeline that directly combines existing modules, and we propose a lightweight augmentation technique, random patch sampling, for training. Compared to existing NeRF+SR methods, our pipeline mitigates the SR computing overhead and can be trained up to 23x faster, making it feasible to run on consumer devices such as the Apple MacBook. Experiments show our pipeline can upscale NeRF outputs by 2-4x while maintaining high quality, increasing inference speeds by up to 18x on an NVIDIA V100 GPU and 12.8x on an M1 Pro chip. We conclude that SR can be a simple but effective technique for improving the efficiency of NeRF models for consumer devices.

cs.CV↗

arXiv2023

Atom: Low-bit Quantization for Efficient and Accurate LLM Serving

The growing demand for Large Language Models (LLMs) in applications such as content generation, intelligent chatbots, and sentiment analysis poses considerable challenges for LLM service providers. To efficiently use GPU resources and boost throughput, batching multiple requests has emerged as a popular paradigm; to further speed up batching, LLM quantization techniques reduce memory consumption and increase computing capacity. However, prevalent quantization schemes (e.g., 8-bit weight-activation quantization) cannot fully leverage the capabilities of modern GPUs, such as 4-bit integer operators, resulting in sub-optimal performance. To maximize LLMs' serving throughput, we introduce Atom, a low-bit quantization method that achieves high throughput improvements with negligible accuracy loss. Atom significantly boosts serving throughput by using low-bit operators and considerably reduces memory consumption via low-bit quantization. It attains high accuracy by applying a novel mixed-precision and fine-grained quantization process. We evaluate Atom on 4-bit weight-activation quantization in the serving context. Atom improves end-to-end throughput (token/s) by up to $7.7\times$ compared to the FP16 and by $2.5\times$ compared to INT8 quantization, while maintaining the same latency target.

cs.LG↗

arXiv2023

Proton FLASH irradiation platform for small animal setup at Chang Gung Memorial Hospital

Background : Proton flash therapy is an emergency research topic in radiation therapy since the Varian announced the promising results from the first in human clinical trial of Flash therapy recently. However, it still needs a lot of researches on this topic, not only to understand the mechanism of the radiobiological effects but also to develop an appropriate dose monitoring system. Purpose : In this study we setup an experimental station for small animal proton Flash irradiation in a clinical machine. The dose monitoring system is able to provide real-time irradiation dose and irradiation time structure. Methods : The dose monitoring system includes homebrewed transmission ionization chamber (TIC), plastic scintillator based beam position monitor, and Poor Man Faraday Cup (FC). Both TIC and FC are equipped with a homebrewed fast reading current integral electronics device. The imaging guidance system comprises a moveable CT, laser, as well as attaching a bead on the body surface of the mouse can accurately guide the testing small animal in position. Results : The dose monitoring system can provide the time structure of delivered dose rate within 1 ms time resolution. Experimental testing results show that the highest dose in one pulse of 230 MeV proton that can be delivered to the target is about 20 Gy during 199 ms pulse period at 100 Gy/s dose rate. Conclusion : A proton research irradiation platform dedicated for studying small animal Flash biological effects has been established at Chang Gung Memorial Hospital. The final setup data represent a reference for the beam users to plan the experiments as well as for the improvement of the facility.

physics.med-ph↗

arXiv2022

SPIN: An Empirical Evaluation on Sharing Parameters of Isotropic Networks

Recent isotropic networks, such as ConvMixer and vision transformers, have found significant success across visual recognition tasks, matching or outperforming non-isotropic convolutional neural networks (CNNs). Isotropic architectures are particularly well-suited to cross-layer weight sharing, an effective neural network compression technique. In this paper, we perform an empirical evaluation on methods for sharing parameters in isotropic networks (SPIN). We present a framework to formalize major weight sharing design decisions and perform a comprehensive empirical evaluation of this design space. Guided by our experimental results, we propose a weight sharing strategy to generate a family of models with better overall efficiency, in terms of FLOPs and parameters versus accuracy, compared to traditional scaling methods alone, for example compressing ConvMixer by 1.9x while improving accuracy on ImageNet. Finally, we perform a qualitative study to further understand the behavior of weight sharing in isotropic architectures. The code is available at https://github.com/apple/ml-spin.

cs.CV↗

arXiv2021

Comprehensive and Clinically Accurate Head and Neck Organs at Risk Delineation via Stratified Deep Learning: A Large-scale Multi-Institutional Study

Accurate organ at risk (OAR) segmentation is critical to reduce the radiotherapy post-treatment complications. Consensus guidelines recommend a set of more than 40 OARs in the head and neck (H&N) region, however, due to the predictable prohibitive labor-cost of this task, most institutions choose a substantially simplified protocol by delineating a smaller subset of OARs and neglecting the dose distributions associated with other OARs. In this work we propose a novel, automated and highly effective stratified OAR segmentation (SOARS) system using deep learning to precisely delineate a comprehensive set of 42 H&N OARs. SOARS stratifies 42 OARs into anchor, mid-level, and small & hard subcategories, with specifically derived neural network architectures for each category by neural architecture search (NAS) principles. We built SOARS models using 176 training patients in an internal institution and independently evaluated on 1327 external patients across six different institutions. It consistently outperformed other state-of-the-art methods by at least 3-5% in Dice score for each institutional evaluation (up to 36% relative error reduction in other metrics). More importantly, extensive multi-user studies evidently demonstrated that 98% of the SOARS predictions need only very minor or no revisions for direct clinical acceptance (saving 90% radiation oncologists workload), and their segmentation and dosimetric accuracy are within or smaller than the inter-user variation. These findings confirmed the strong clinical applicability of SOARS for the OAR delineation process in H&N cancer radiotherapy workflows, with improved efficiency, comprehensiveness, and quality.

eess.IV↗

arXiv2021

Accelerating SpMM Kernel with Cache-First Edge Sampling for Graph Neural Networks

Graph neural networks (GNNs), an emerging deep learning model class, can extract meaningful representations from highly expressive graph-structured data and are therefore gaining popularity for wider ranges of applications. However, current GNNs suffer from the poor performance of their sparse-dense matrix multiplication (SpMM) operator, even when using powerful GPUs. Our analysis shows that 95% of the inference time could be spent on SpMM when running popular GNN models on NVIDIA's advanced V100 GPU. Such SpMM performance bottleneck hinders GNNs' applicability to large-scale problems or the development of more sophisticated GNN models. To address this inference time bottleneck, we introduce ES-SpMM, a cache-first edge sampling mechanism and codesigned SpMM kernel. ES-SpMM uses edge sampling to downsize the graph to fit into GPU's shared memory. It thus reduces the computation cost and improves SpMM's cache locality. To evaluate ES-SpMM's performance, we integrated it with a popular GNN framework, DGL, and tested it using representative GNN models and datasets. Our results show that ES-SpMM outperforms the highly optimized cuSPARSE SpMM kernel by up to 4.35x with no accuracy loss and by 45.3x with less than a 1% accuracy loss.

cs.LG↗

arXiv2020

Organ at Risk Segmentation for Head and Neck Cancer using Stratified Learning and Neural Architecture Search

OAR segmentation is a critical step in radiotherapy of head and neck (H&N) cancer, where inconsistencies across radiation oncologists and prohibitive labor costs motivate automated approaches. However, leading methods using standard fully convolutional network workflows that are challenged when the number of OARs becomes large, e.g. > 40. For such scenarios, insights can be gained from the stratification approaches seen in manual clinical OAR delineation. This is the goal of our work, where we introduce stratified organ at risk segmentation (SOARS), an approach that stratifies OARs into anchor, mid-level, and small & hard (S&H) categories. SOARS stratifies across two dimensions. The first dimension is that distinct processing pipelines are used for each OAR category. In particular, inspired by clinical practices, anchor OARs are used to guide the mid-level and S&H categories. The second dimension is that distinct network architectures are used to manage the significant contrast, size, and anatomy variations between different OARs. We use differentiable neural architecture search (NAS), allowing the network to choose among 2D, 3D or Pseudo-3D convolutions. Extensive 4-fold cross-validation on 142 H&N cancer patients with 42 manually labeled OARs, the most comprehensive OAR dataset to date, demonstrates that both pipeline- and NAS-stratification significantly improves quantitative performance over the state-of-the-art (from 69.52% to 73.68% in absolute Dice scores). Thus, SOARS provides a powerful and principled means to manage the highly complex segmentation space of OARs.

cs.CV↗