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Daniel Obmann

Publications and source records attributed to Daniel Obmann.

10 recordsLinked to original sources

Sampling and resolution in sparse view photoacoustic tomography

We investigate resolution in photoacoustic tomography (PAT). Using Shannon theory, we investigate the theoretical resolution limit of sparse view PAT theoretically, and empirically demonstrate that all reconstruction methods used exceed this limit.

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Error correcting 2D-3D cascaded network for myocardial infarct scar segmentation on late gadolinium enhancement cardiac magnetic resonance images

Late gadolinium enhancement (LGE) cardiac magnetic resonance (CMR) imaging is considered the in vivo reference standard for assessing infarct size (IS) and microvascular obstruction (MVO) in ST-elevation myocardial infarction (STEMI) patients. However, the exact quantification of those markers of myocardial infarct severity remains challenging and very time-consuming. As LGE distribution patterns can be quite complex and hard to delineate from the blood pool or epicardial fat, automatic segmentation of LGE CMR images is challenging. In this work, we propose a cascaded framework of two-dimensional and three-dimensional convolutional neural networks (CNNs) which enables to calculate the extent of myocardial infarction in a fully automated way. By artificially generating segmentation errors which are characteristic for 2D CNNs during training of the cascaded framework we are enforcing the detection and correction of 2D segmentation errors and hence improve the segmentation accuracy of the entire method. The proposed method was trained and evaluated on two publicly available datasets. We perform comparative experiments where we show that our framework outperforms state-of-the-art reference methods in segmentation of myocardial infarction. Furthermore, in extensive ablation studies we show the advantages that come with the proposed error correcting cascaded method. The code of this project is publicly available at https://github.com/matthi99/EcorC.git

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Convergence analysis of equilibrium methods for inverse problems

Solving inverse problems \(Ax = y\) is central to a variety of practically important fields such as medical imaging, remote sensing, and non-destructive testing. The most successful and theoretically best-understood method is convex variational regularization, where approximate but stable solutions are defined as minimizers of \( \|A(\cdot) - y^\delta\|^2 / 2 + \alpha \mathcal{R}(\cdot)\), with \(\mathcal{R}\) a regularization functional. Recent methods such as deep equilibrium models and plug-and-play approaches, however, go beyond variational regularization. Motivated by these innovations, we introduce implicit non-variational (INV) regularization, where approximate solutions are defined as solutions of \(A^*(A x - y^\delta) + \alpha R(x) = 0\) for some regularization operator \(R\). When the regularization operator is the gradient of a functional, INV reduces to classical variational regularization. However, in methods like DEQ and PnP, \(R\) is not a gradient field, and the existing theoretical foundation remains incomplete. To address this, we establish stability and convergence results in this broader setting, including convergence rates and stability estimates measured via a absolute Bregman distance.

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Convergence rates for critical point regularization

Tikhonov regularization involves minimizing the combination of a data discrepancy term and a regularizing term, and is the standard approach for solving inverse problems. The use of non-convex regularizers, such as those defined by trained neural networks, has been shown to be effective in many cases. However, finding global minimizers in non-convex situations can be challenging, making existing theory inapplicable. A recent development in regularization theory relaxes this requirement by providing convergence based on critical points instead of strict minimizers. This paper investigates convergence rates for the regularization with critical points using Bregman distances. Furthermore, we show that when implementing near-minimization through an iterative algorithm, a finite number of iterations is sufficient without affecting convergence rates.

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Convergence analysis of critical point regularization with non-convex regularizers

One of the key assumptions in the stability and convergence analysis of variational regularization is the ability of finding global minimizers. However, such an assumption is often not feasible when the regularizer is a black box or non-convex making the search for global minimizers of the involved Tikhonov functional a challenging task. This is in particular the case for the emerging class of learned regularizers defined by neural networks. Instead, standard minimization schemes are applied which typically only guarantee that a critical point is found. To address this issue, in this paper we study stability and convergence properties of critical points of Tikhonov functionals with a possible non-convex regularizer. To this end, we introduce the concept of relative sub-differentiability and study its basic properties. Based on this concept, we develop a convergence analysis assuming relative sub-differentiability of the regularizer. The rationale behind the proposed concept is that critical points of the Tikhonov functional are also relative critical points and that for the latter a convergence theory can be developed. For the case where the noise level tends to zero, we derive a limiting problem representing first-order optimality conditions of a related restricted optimization problem. Besides this, we also give a comparison with classical methods and show that the class of ReLU-networks are appropriate choices for the regularization functional. Finally, we provide numerical simulations that support our theoretical findings and the need for the sort of analysis that we provide in this paper.

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Sparse aNETT for Solving Inverse Problems with Deep Learning

We propose a sparse reconstruction framework (aNETT) for solving inverse problems. Opposed to existing sparse reconstruction techniques that are based on linear sparsifying transforms, we train an autoencoder network $D \circ E$ with $E$ acting as a nonlinear sparsifying transform and minimize a Tikhonov functional with learned regularizer formed by the $\ell^q$-norm of the encoder coefficients and a penalty for the distance to the data manifold. We propose a strategy for training an autoencoder based on a sample set of the underlying image class such that the autoencoder is independent of the forward operator and is subsequently adapted to the specific forward model. Numerical results are presented for sparse view CT, which clearly demonstrate the feasibility, robustness and the improved generalization capability and stability of aNETT over post-processing networks.

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Deep synthesis regularization of inverse problems

Recently, a large number of efficient deep learning methods for solving inverse problems have been developed and show outstanding numerical performance. For these deep learning methods, however, a solid theoretical foundation in the form of reconstruction guarantees is missing. In contrast, for classical reconstruction methods, such as convex variational and frame-based regularization, theoretical convergence and convergence rate results are well established. In this paper, we introduce deep synthesis regularization (DESYRE) using neural networks as nonlinear synthesis operator bridging the gap between these two worlds. The proposed method allows to exploit the deep learning benefits of being well adjustable to available training data and on the other hand comes with a solid mathematical foundation. We present a complete convergence analysis with convergence rates for the proposed deep synthesis regularization. We present a strategy for constructing a synthesis network as part of an analysis-synthesis sequence together with an appropriate training strategy. Numerical results show the plausibility of our approach.

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Augmented NETT Regularization of Inverse Problems

We propose aNETT (augmented NETwork Tikhonov) regularization as a novel data-driven reconstruction framework for solving inverse problems. An encoder-decoder type network defines a regularizer consisting of a penalty term that enforces regularity in the encoder domain, augmented by a penalty that penalizes the distance to the data manifold. We present a rigorous convergence analysis including stability estimates and convergence rates. For that purpose, we prove the coercivity of the regularizer used without requiring explicit coercivity assumptions for the networks involved. We propose a possible realization together with a network architecture and a modular training strategy. Applications to sparse-view and low-dose CT show that aNETT achieves results comparable to state-of-the-art deep-learning-based reconstruction methods. Unlike learned iterative methods, aNETT does not require repeated application of the forward and adjoint models, which enables the use of aNETT for inverse problems with numerically expensive forward models. Furthermore, we show that aNETT trained on coarsely sampled data can leverage an increased sampling rate without the need for retraining.

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Sparse synthesis regularization with deep neural networks

We propose a sparse reconstruction framework for solving inverse problems. Opposed to existing sparse regularization techniques that are based on frame representations, we train an encoder-decoder network by including an $\ell^1$-penalty. We demonstrate that the trained decoder network allows sparse signal reconstruction using thresholded encoded coefficients without losing much quality of the original image. Using the sparse synthesis prior, we propose minimizing the $\ell^1$-Tikhonov functional, which is the sum of a data fitting term and the $\ell^1$-norm of the synthesis coefficients, and show that it provides a regularization method.

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