arXiv subjects

Daniel Polak

Publications and source records attributed to Daniel Polak.

7 recordsLinked to original sources

arXiv2026

High-Temporal-Resolution Motion Correction in Magnetic Resonance Fingerprinting Using a Quantitative Scout and Compact Spiral Navigators

Motion correction in magnetic resonance fingerprinting (MRF) helps preserve the accuracy of quantitative maps; however, existing approaches provide motion updates only every 7-8 seconds. We propose a navigation framework that integrates compact k-space navigators throughout the MRF acquisition, enabling sub-second motion estimation at minimal sequence overhead. A 3D spiral-projection MRF sequence was augmented with three orthogonal spiral navigators inserted every 0.5 seconds, enabling motion estimation by comparing navigator signals with quantitative scout (Q-Scout) data, i.e., motion-free low-resolution k-space with matching contrast evolution. The Q-Scout is obtained via a rapid calibration during the dummy preparation period, incurring no additional scan time. Motion estimation is formulated as dictionary matching in a discriminant subspace with optimization refinement. The method was evaluated in simulation and in vivo for 1 mm isotropic brain 3D MRF at 3 T. Across 35 motion-corrupted acquisitions with motion-free references available, the proposed motion correction reduced MRF reconstruction normalized root-mean-square error (NRMSE) by 7.1% and increased the structural similarity index measure (SSIM) by 0.085. Motion estimates aligned with 8 second temporal-rate image-based navigation (mean absolute difference of 0.15 mm and 0.23 degrees), while the proposed method provided higher temporal resolution and improved motion correction. The proposed framework enables robust motion navigation in MRF at 0.5 second temporal resolution with minimal sequence overhead. By using contrast-consistent modeling and efficient inference, it improves the reliability of quantitative MRI under rapid, unpredictable motion.

eess.SP↗

arXiv2026

Fast Reconstruction of Motion-Corrupted Data with Mobile-GRAPPA: Motion and dB0 Inhomogeneity Correction Leveraging Efficient GRAPPA

Advanced motion navigations now enable rapid tracking of subject motion and dB0-induced phase, but accurately incorporating this high-temporal-resolution information into SENSE (Aligned-SENSE) is often computationally prohibitive. We propose "Mobile-GRAPPA", a k-space "cleaning" approach that uses local GRAPPA operators to remove motion and dB0 related corruption so that the resulting data can be reconstructed with standard SENSE. We efficiently train a family of k-space-position-specific Mobile-GRAPPA kernels via a lightweight multilayer perceptron (MLP) and apply them across k-space to generate clean data. In experiments on highly motion-corrupted 1-mm whole-brain GRE (Tacq = 10 min; 1,620 motion/dB0 trackings) and EPTI (Tacq = 2 min; 544 trackings), Mobile-GRAPPA enabled accurate reconstruction with negligible time penalty, whereas full Aligned-SENSE was impractical (reconstruction times > 10 h for GRE and > 10 days for EPTI). These results show that Mobile-GRAPPA incorporates detailed motion and dB0 tracking into SENSE with minimal computational overhead, enabling fast, high-quality reconstructions of challenging data.

eess.SP↗

arXiv2023

Time-efficient, High Resolution 3T Whole Brain Quantitative Relaxometry using 3D-QALAS with Wave-CAIPI Readouts

Purpose: Volumetric, high-resolution, quantitative mapping of brain tissue relaxation properties is hindered by long acquisition times and signal-to-noise (SNR) challenges. This study, for the first time, combines the time-efficient wave-CAIPI readouts into the 3D-quantification using an interleaved Look-Locker acquisition sequence with a T2 preparation pulse (3D-QALAS) acquisition scheme, enabling full brain quantitative T1, T2 and proton density (PD) maps at 1.15 mm3 isotropic voxels in only 3 minutes. Methods: Wave-CAIPI readouts were embedded in the standard 3D-QALAS encoding scheme, enabling full brain quantitative parameter maps (T1, T2, and PD) at acceleration factors of R=3x2 with minimum SNR loss due to g-factor penalties. The quantitative parameter maps were estimated using a dictionary-based mapping algorithm incorporating inversion efficiency and B1 field inhomogeneity. The quantitative maps using the accelerated protocol were quantitatively compared against those obtained from conventional 3D-QALAS sequence using GRAPPA acceleration of R=2 in the ISMRM NIST phantom, and ten healthy volunteers. Results: When tested in both the ISMRM/NIST phantom and ten healthy volunteers, the quantitative maps using the accelerated protocol showed excellent agreement against those obtained from conventional 3D-QALAS at RGRAPPA=2. Conclusion: 3D-QALAS enhanced with wave-CAIPI readouts enables time-efficient, full brain quantitative T1, T2, and PD mapping at 1.15 mm3 in 3 minutes at R=3x2 acceleration. When tested on the NIST phantom and ten healthy volunteers, the quantitative maps obtained from the accelerated wave-CAIPI 3D-QALAS protocol showed very similar values to those obtained from the standard 3D-QALAS (R=2) protocol, alluding to the robustness and reliability of the proposed methods.

physics.med-ph↗

arXiv2022

Wave-encoding and Shuffling Enables Rapid Time Resolved Structural Imaging

T2-Shuffling reconstructs multiple sharp T2-weighted images from a single volumetric fast spin-echo (3D-FSE) scan. Wave-CAIPI is a parallel imaging technique that achieves good reconstruction at high accelerations through additional sinusoidal gradients that induce a voxel spreading effect in the readout direction to better take advantage of coil-sensitivity information. In this work, the Shuffling model in T2-Shuffling is augmented with wave-encoding to achieve higher acceleration capability. The resulting "Wave-Shuffling" approach is applied to 3D-FSE and Magnetization-Prepared Rapid Gradient-Echo (MPRAGE) to achieve rapid, 1 mm-isotropic resolution, time-resolved structural imaging.

physics.med-ph↗

arXiv2019

Joint multi-contrast Variational Network reconstruction (jVN) with application to rapid 2D and 3D imaging

Purpose: To improve the image quality of highly accelerated multi-channel MRI data by learning a joint variational network that reconstructs multiple clinical contrasts jointly. Methods: Data from our multi-contrast acquisition was embedded into the variational network architecture where shared anatomical information is exchanged by mixing the input contrasts. Complementary k-space sampling across imaging contrasts and Bunch-Phase/Wave-Encoding were used for data acquisition to improve the reconstruction at high accelerations. At 3T, our joint variational network approach across T1w, T2w and T2-FLAIR-weighted brain scans was tested for retrospective under-sampling at R=6 (2D) and R=4x4 (3D) acceleration. Prospective acceleration was also performed for 3D data where the combined acquisition time for whole brain coverage at 1 mm isotropic resolution across three contrasts was less than three minutes. Results: Across all test datasets, our joint multi-contrast network better preserved fine anatomical details with reduced image-blurring when compared to the corresponding single-contrast reconstructions. Improvement in image quality was also obtained through complementary k-space sampling and Bunch-Phase/Wave-Encoding where the synergistic combination yielded the overall best performance as evidenced by exemplarily slices and quantitative error metrics. Conclusion: By leveraging shared anatomical structures across the jointly reconstructed scans, our joint multi-contrast approach learnt more efficient regularizers which helped to retain natural image appearance and avoid over-smoothing. When synergistically combined with advanced encoding techniques, the performance was further improved, enabling up to R=16-fold acceleration with good image quality. This should help pave the way to very rapid high-resolution brain exams.

eess.IV↗

arXiv2019

Nonlinear Dipole Inversion (NDI) enables Quantitative Susceptibility Mapping (QSM) without parameter tuning

We propose Nonlinear Dipole Inversion (NDI) for high-quality Quantitative Susceptibility Mapping (QSM) without regularization tuning, while matching the image quality of state-of-the-art reconstruction techniques. In addition to avoiding over-smoothing that these techniques often suffer from, we also obviate the need for parameter selection. NDI is flexible enough to allow for reconstruction from an arbitrary number of head orientations, and outperforms COSMOS even when using as few as 1-direction data. This is made possible by a nonlinear forward-model that uses the magnitude as an effective prior, for which we derived a simple gradient descent update rule. We synergistically combine this physics-model with a Variational Network (VN) to leverage the power of deep learning in the VaNDI algorithm. This technique adopts the simple gradient descent rule from NDI and learns the network parameters during training, hence requires no additional parameter tuning. Further, we evaluate NDI at 7T using highly accelerated Wave-CAIPI acquisitions at 0.5 mm isotropic resolution and demonstrate high-quality QSM from as few as 2-direction data.

eess.IV↗

arXiv2018

Manipulating matter with strong coupling: harvesting triplet excitons in organic exciton microcavities

Exciton-polaritons are quasiparticles with mixed photon and exciton character that demonstrate rich quantum phenomena, novel optoelectronic devices and the potential to modify chemical properties of materials. Organic semiconductors are of current interest for their room-temperature polariton formation. However, within organic optoelectronic devices, it is often the 'dark' spin-1 triplet excitons that dominate operation. These triplets have been largely ignored in treatments of polariton physics. Here we demonstrate polariton population from the triplet manifold via triplet-triplet annihilation, leading to polariton emission that is longer-lived (>microseconds) even than exciton emission in bare films. This enhancement arises from spin-2 triplet-pair states, formed by singlet fission or triplet-triplet annihilation, feeding the polariton. This is possible due to state mixing, which -in the strong coupling regime- leads to sharing of photonic character with states that are formally non-emissive. Such 'photonic sharing' offers the enticing possibility of harvesting or manipulating even states that are formally dark.

cond-mat.mtrl-sci↗