arXiv subjects

David Phillips

Publications and source records attributed to David Phillips.

At least 19 recordsLinked to original sources

arXiv2025

Temporal Substepping Scheme for Magnetohydrodynamics with Cell-based Adaptive Mesh Refinement on Staggered Grid

We present a new algorithm for numerical magnetohydrodynamics on staggered meshes preserving $\nabla \cdot B = 0$. Our algorithm is based on the constrained transport method and supports both cell-based adaptive mesh refinement and temporal substepping. We handle resolution changes directly on the logically Cartesian grid without needing interpolation or projection between nested or neighboring grids, nor coupling the solution between refinement levels.

physics.space-ph↗

arXiv2025

Vector magnetometry using cavity-enhanced microwave readout in nitrogen-vacancy diamond

We demonstrate $4\pi$-steradian vector magnetic field sensing using an ensemble of nitrogen-vacancy (NV) centers in a single-crystal diamond coupled to a microwave (MW) cavity. The MW cavity enhances the spin-photon coupling which enables efficient, high-contrast spin-state readout via MW interrogation and removes the need for bulky optical collection components. An applied AC bias magnetic field lifts the zero-field degeneracy of the four crystallographic NV orientations, allowing each orientation to be individually addressed and used for vector reconstruction of the magnetic field. The resulting magnetometer has a 40\% contrast (20x higher than typical for optical spin-ensemble readout) and achieves a single-axis sensitivity of 250 pT/$\sqrt{\mathrm{Hz}}$ which is flat from DC to 1 kHz. Noise models of the composite spin-cavity system establish MW amplitude noise as the dominant noise source and predict a thermal noise limit of 2 pT/$\sqrt{\mathrm{Hz}}$.

quant-ph↗

arXiv2025

Extreme vulnerability to intruder attacks destabilizes network dynamics

Consensus, synchronization, formation control, and power grid balance are examples of desirable dynamical states that arise in networks. Here we investigate how such states can be destabilized by an intruder agent within an otherwise functioning network. We see that a single adversarial node, coupled through adversarial connections to one or more other nodes, is sufficient to destabilize the entire network. We further show that concentrating the attack on a single low-indegree node induces the greatest instability, challenging the common assumption that hubs are the most critical nodes. This leads to a new characterization of network vulnerability, identifying low-indegree nodes as the most vulnerable components. Although derived for linear systems, our results extend to nonlinear networks, including the Kuramoto model. These findings reveal an intrinsic vulnerability of technological, social, and biological networks.

nlin.AO↗

arXiv2024

Infinite intersections of doubling measures, weights, and function classes

A series of longstanding questions in harmonic analysis ask if the intersection of all prime ``$p$-adic versions" of an object, such as a doubling measure, or a Muckenhoupt or reverse H\"older weight, recovers the full object. Investigation into these questions was reinvigorated in 2019 by work of Boylan-Mills-Ward, culminating in showing that this recovery fails for a finite intersection in work of Anderson-Bellah-Markman-Pollard-Zeitlin. Via generalizing a new number-theoretic construction therein, we answer these questions.

math.CA↗

arXiv2024

A splitting method for numerical relativistic magnetohydrodynamics

We describe a novel splitting approach to numerical relativistic magnetohydrodynamics (RMHD) designed to expand its applicability to the domain of ultra-high magnetisation (high-$\sigma$). In this approach, the electromagnetic field is split into the force-free component and its perturbation due to the plasma inertia. Accordingly, the system of RMHD equations is extended to include the subsystem of force-free degenerate electrodynamics and the subsystem governing the plasma dynamics and the perturbation of the force-free field. The combined system of conservation laws is integrated simultaneously, to which aim various numerical techniques can be used, and the force-free field is recombined with its perturbation at the end of every timestep. To explore the potential of this splitting approach, we combined it with a 3rd-order WENO method, and carried out a variety of 1D and 2D test simulations. The simulations confirm the robustness of the splitting method in the high-$\sigma$ regime, and also show that it remains accurate in the low-$\sigma$ regime, all the way down to $\sigma$ = 0. Thus, the method can be used for simulating complex astrophysical flows involving a wide range of physical parameters. The numerical resistivity of the code obeys a simple ansatz and allows fast magnetic reconnection in the plasmoid-dominated regime. The results of simulations involving thin and long current sheets agree very well with the theory of resistive magnetic reconnection.

astro-ph.HE↗

arXiv2024

Fibration symmetry-breaking supports functional transitions in a brain network engaged in language

In his book 'A Beautiful Question', physicist Frank Wilczek argues that symmetry is 'nature's deep design,' governing the behavior of the universe, from the smallest particles to the largest structures. While symmetry is a cornerstone of physics, it has not yet been found widespread applicability to describe biological systems, particularly the human brain. In this context, we study the human brain network engaged in language and explore the relationship between the structural connectivity (connectome or structural network) and the emergent synchronization of the mesoscopic regions of interest (functional network). We explain this relationship through a different kind of symmetry than physical symmetry, derived from the categorical notion of Grothendieck fibrations. This introduces a new understanding of the human brain by proposing a local symmetry theory of the connectome, which accounts for how the structure of the brain's network determines its coherent activity. Among the allowed patterns of structural connectivity, synchronization elicits different symmetry subsets according to the functional engagement of the brain. We show that the resting state is a particular realization of the cerebral synchronization pattern characterized by a fibration symmetry that is broken in the transition from rest to language. Our findings suggest that the brain's network symmetry at the local level determines its coherent function, and we can understand this relationship from theoretical principles.

q-bio.NC↗

arXiv2024

Symmetries and synchronization from whole-neural activity in {\it C. elegans} connectome: Integration of functional and structural networks

Understanding the dynamical behavior of complex systems from their underlying network architectures is a long-standing question in complexity theory. Therefore, many metrics have been devised to extract network features like motifs, centrality, and modularity measures. It has previously been proposed that network symmetries are of particular importance since they are expected to underly the synchronization of a system's units, which is ubiquitously observed in nervous system activity patterns. However, perfectly symmetrical structures are difficult to assess in noisy measurements of biological systems, like neuronal connectomes. Here, we devise a principled method to infer network symmetries from combined connectome and neuronal activity data. Using nervous system-wide population activity recordings of the \textit{C.elegans} backward locomotor system, we infer structures in the connectome called fibration symmetries, which can explain which group of neurons synchronize their activity. Our analysis suggests functional building blocks in the animal's motor periphery, providing new testable hypotheses on how descending interneuron circuits communicate with the motor periphery to control behavior. Our approach opens a new door to exploring the structure-function relations in other complex systems, like the nervous systems of larger animals.

q-bio.NC↗

arXiv2023

An operator-splitting numerical scheme for relativistic magnetohydrodynamics

We describe a novel operator-splitting approach to numerical relativistic magnetohydrodynamics designed to expand its applicability to the domain of ultra-high magnetisation. In this approach, the electromagnetic field is split into the force-free component, governed by the equations of force-free degenerate electrodynamics (FFDE), and the perturbation component, governed by the perturbation equations derived from the full system of relativistic magnetohydrodynamics (RMHD). The combined system of the FFDE and perturbation equations is integrated simultaneously, for which various numerical techniques developed for hyperbolic conservation laws can be used. At the end of every time-step of numerical integration, the force-free and the perturbation components of the electromagnetic field are recombined and the result is regarded as the initial value of the force-free component for the next time-step, whereas the initial value of the perturbation component is set to zero. To explore the potential of this approach, we build a 3rd-order WENO code, which was used to carry out 1D and 2D test simulations. Their results show that this operator-splitting approach allows us to bypass the stiffness of RMHD in the ultra-high-magnetisation regime where the perturbation component becomes very small. At the same time, the cod

astro-ph.IM↗

arXiv2023

Single-Integrator Consensus Dynamics over Minimally Reactive Networks

The problem of achieving consensus in a network of connected systems arises in many science and engineering applications. In contrast to previous works, we focus on the system reactivity, i.e., the initial amplification of the norm of the system states. We identify a class of networks that we call minimally reactive, which are such that the indegree and the outdegree of each node of the network are the same. We propose several optimization procedures in which minimum perturbations (links or link weights) are imposed on a given network topology to make it minimally reactive. A new concept of structural reactivity is introduced which measures how much a given network is far from becoming minimally reactive by link perturbations. The structural reactivity of directed random graphs is studied.

eess.SY↗

arXiv2021

Symmetry-driven network reconstruction through pseudobalanced coloring optimization

Symmetries found through automorphisms or graph fibrations provide important insights in network analysis. Symmetries identify clusters of robust synchronization in the network which improves the understanding of the functionality of complex biological systems. Network symmetries can be determined by finding a {\it balanced coloring} of the graph, which is a node partition in which each cluster of nodes receives the same information (color) from the rest of the graph. In recent work we saw that biological networks such as gene regulatory networks, metabolic networks and neural networks in organisms ranging from bacteria to yeast and humans are rich in fibration symmetries related to the graph balanced coloring. Networks based on real systems, however, are built on experimental data which are inherently incomplete, due to missing links, collection errors, and natural variations within specimens of the same biological species. Therefore, it is fair to assume that some of the existing symmetries were not detected in our analysis. For that reason, a method to find pseudosymmetries and repair networks based on those symmetries is important when analyzing real world networks. In this paper we introduce the {\it pseudobalanced coloring} \eqref{eq:mainip} problem, and provide an integer programming formulation which (a) calculates a pseudobalanced coloring of the graph taking into account the missing data, and (b) optimally repairs the graph with the minimal number of added/removed edges to maximize the symmetry of the graph. We apply our formulation to the {\it C. elegans} connectome to find pseudocoloring and the optimal graph repair. Our solution compares well with a manually curated ground-truth {\it C. elegans} graph as well as solutions generated by other methods of missing link prediction.

q-bio.QM↗

arXiv2021

Matryoshka and Disjoint Cluster Synchronization of Networks

The main motivation for this paper is to present a definition of network synchronizability for the case of cluster synchronization (CS), in an analogous fashion to Barahona and Pecora for the case of complete synchronization. We find this problem to be substantially more complex than the original one. We distinguish between the two cases of networks with intertwined clusters and no intertwined clusters and between {the two cases that the master stability function is negative either in a bounded range or in an unbounded range of its argument. We first obtain a definition of synchronizability that applies to each individual cluster within a network and then attempt to generalize this definition to the entire network. For CS, the synchronous solution of each cluster may be stable independent of the stability of the other clusters, which results in possibly different ranges in which each cluster synchronizes (isolated CS.) For each pair of clusters, we distinguish between three different cases: Matryoshka Cluster Synchronization (when the range of the stability of the synchronous solution for one cluster is included in that of the other cluster), Partially Disjoint Cluster Synchronization (when the ranges of stability of the synchronous solutions partially overlap), and Complete Disjoint Cluster Synchronization (when the ranges of stability of the synchronous solutions do not overlap.)

eess.SY↗

arXiv2020

TOI-1235 b: a keystone super-Earth for testing radius valley emergence models around early M dwarfs

Small planets on close-in orbits tend to exhibit envelope mass fractions of either effectively zero or up to a few percent depending on their size and orbital period. Models of thermally-driven atmospheric mass loss and of terrestrial planet formation in a gas-poor environment make distinct predictions regarding the location of this rocky/non-rocky transition in period-radius space. Here we present the confirmation of TOI-1235 b ($P=3.44$ days, $r_p=1.738^{+0.087}_{-0.076}$ R$_{\oplus}$), a planet whose size and period are intermediate between the competing model predictions thus making the system an important test case for emergence models of the rocky/non-rocky transition around early M dwarfs ($R_s=0.630\pm 0.015$ R$_{\odot}$, $M_s=0.640\pm 0.016$ M$_{\odot}$). We confirm the TESS planet discovery using reconnaissance spectroscopy, ground-based photometry, high-resolution imaging, and a set of 38 precise radial-velocities from HARPS-N and HIRES. We measure a planet mass of $6.91^{+0.75}_{-0.85}$ M$_{\oplus}$, which implies an iron core mass fraction of $20^{+15}_{-12}$% in the absence of a gaseous envelope. The bulk composition of TOI-1235 b is therefore consistent with being Earth-like and we constrain a H/He envelope mass fraction to be $<0.5$% at 90% confidence. Our results are consistent with model predictions from thermally-driven atmospheric mass loss but not with gas-poor formation, suggesting that the former class of processes remain efficient at sculpting close-in planets around early M dwarfs. Our RV analysis also reveals a strong periodicity close to the first harmonic of the photometrically-determined stellar rotation period that we treat as stellar activity, despite other lines of evidence favoring a planetary origin ($P=21.8^{+0.9}_{-0.8}$ days, $m_p\sin{i}=13.0^{+3.8}_{-5.3}$ M$_{\oplus}$) that cannot be firmly ruled out by our data.

astro-ph.EP↗

arXiv2020

A pair of TESS planets spanning the radius valley around the nearby mid-M dwarf LTT 3780

We present the confirmation of two new planets transiting the nearby mid-M dwarf LTT 3780 (TIC 36724087, TOI-732, $V=13.07$, $K_s=8.204$, $R_s$=0.374 R$_{\odot}$, $M_s$=0.401 M$_{\odot}$, d=22 pc). The two planet candidates are identified in a single TESS sector and are validated with reconnaissance spectroscopy, ground-based photometric follow-up, and high-resolution imaging. With measured orbital periods of $P_b=0.77$ days, $P_c=12.25$ days and sizes $r_{p,b}=1.33\pm 0.07$ R$_{\oplus}$, $r_{p,c}=2.30\pm 0.16$ R$_{\oplus}$, the two planets span the radius valley in period-radius space around low mass stars thus making the system a laboratory to test competing theories of the emergence of the radius valley in that stellar mass regime. By combining 63 precise radial-velocity measurements from HARPS and HARPS-N, we measure planet masses of $m_{p,b}=2.62^{+0.48}_{-0.46}$ M$_{\oplus}$ and $m_{p,c}=8.6^{+1.6}_{-1.3}$ M$_{\oplus}$, which indicates that LTT 3780b has a bulk composition consistent with being Earth-like, while LTT 3780c likely hosts an extended H/He envelope. We show that the recovered planetary masses are consistent with predictions from both photoevaporation and from core-powered mass loss models. The brightness and small size of LTT 3780, along with the measured planetary parameters, render LTT 3780b and c as accessible targets for atmospheric characterization of planets within the same planetary system and spanning the radius valley.

astro-ph.EP↗

arXiv2019

Using HARPS-N to characterise the long-period planets in the PH-2 and Kepler-103 systems

We present confirmation of the planetary nature of PH-2b, as well as the first mass estimates for the two planets in the Kepler-103 system. PH-2b and Kepler-103c are both long-period and transiting, a sparsely-populated category of exoplanet. We use {\it Kepler} light-curve data to estimate a radius, and then use HARPS-N radial velocities to determine the semi-amplitude of the stellar reflex motion and, hence, the planet mass. For PH-2b we recover a 3.5-$\sigma$ mass estimate of $M_p = 109^{+30}_{-32}$ M$_\oplus$ and a radius of $R_p = 9.49\pm0.16$ R$_\oplus$. This means that PH-2b has a Saturn-like bulk density and is the only planet of this type with an orbital period $P > 200$ days that orbits a single star. We find that Kepler-103b has a mass of $M_{\text{p,b}} = 11.7^{+4.31}_{-4.72}$ M$_{\oplus}$ and Kepler-103c has a mass of $M_{\text{p,c}} = 58.5^{+11.2}_{-11.4}$ M$_{\oplus}$. These are 2.5$\sigma$ and 5$\sigma$ results, respectively. With radii of $R_{\text{p,b}} = 3.49^{+0.06}_{-0.05}$ R$_\oplus$, and $R_{\text{p,c}} = 5.45^{+0.18}_{-0.17}$ R$_\oplus$, these results suggest that Kepler-103b has a Neptune-like density, while Kepler-103c is one of the highest density planets with a period $P > 100$ days. By providing high-precision estimates for the masses of the long-period, intermediate-mass planets PH-2b and Kepler-103c, we increase the sample of long-period planets with known masses and radii, which will improve our understanding of the mass-radius relation across the full range of exoplanet masses and radii.

astro-ph.EP↗

arXiv2019

An 11 Earth-Mass, Long-Period Sub-Neptune Orbiting a Sun-like Star

Although several thousands of exoplanets have now been detected and characterized, observational biases have led to a paucity of long-period, low-mass exoplanets with measured masses and a corresponding lag in our understanding of such planets. In this paper we report the mass estimation and characterization of the long-period exoplanet Kepler-538b. This planet orbits a Sun-like star (V = 11.27) with M_* = 0.892 +/- (0.051, 0.035) M_sun and R_* = 0.8717 +/- (0.0064, 0.0061) R_sun. Kepler-538b is a 2.215 +/- (0.040, 0.034) R_earth sub-Neptune with a period of P = 81.73778 +/- 0.00013 d. It is the only known planet in the system. We collected radial velocity (RV) observations with HIRES on Keck I and HARPS-N on the TNG. We characterized stellar activity by a Gaussian process with a quasi-periodic kernel applied to our RV and cross correlation function full width at half maximum (FWHM) observations. By simultaneously modeling Kepler photometry, RV, and FWHM observations, we found a semi-amplitude of K = 1.68 +/- (0.39, 0.38) m s^-1 and a planet mass of M_p = 10.6 +/- (2.5, 2.4) M_earth. Kepler-538b is the smallest planet beyond P = 50 d with an RV mass measurement. The planet likely consists of a significant fraction of ices (dominated by water ice), in addition to rocks/metals, and a small amount of gas. Sophisticated modeling techniques such as those used in this paper, combined with future spectrographs with ultra high-precision and stability will be vital for yielding more mass measurements in this poorly understood exoplanet regime. This in turn will improve our understanding of the relationship between planet composition and insolation flux and how the rocky to gaseous transition depends on planetary equilibrium temperature.

astro-ph.EP↗

arXiv2019

Direct Acceleration: Cosmic and Exoplanet Synergies

Direct measurement of acceleration is a key scientific goal for both cosmology and exoplanets. For cosmology, the concept of redshift drift (more than 60 years old by the 2020s) could directly establish the Friedmann-Lema{\^\i}tre-Robertson-Walker model. It would increase the dark energy figure of merit by a factor of 3 beyond Stage 4 experiments, in combination with cosmic microwave background measurements. For exoplanets, the same technology required provides unprecedented radial velocity accuracy, enabling detection of Earth mass planets in the habitable zone. Other science cases include mapping the Milky Way gravitational potential and testing its dark matter distribution.

astro-ph.IM↗

arXiv2019

K2-291 b: A rocky super-Earth in a 2.2 day orbit

K2-291 (EPIC 247418783) is a solar-type star with a radius of R_star = 0.899 $\pm$ 0.034 R_sun and mass of M_star=0.934 $\pm$ 0.038 M_sun. From K2 C13 data, we found one super-Earth planet (R_p = 1.589+0.095-0.072 R_Earth) transiting this star on a short period orbit (P = 2.225177 +6.6e-5 -6.8e-5 days). We followed this system up with adaptive-optic imaging and spectroscopy to derive stellar parameters, search for stellar companions, and determine a planet mass. From our 75 radial velocity measurements using HIRES on Keck I and HARPS-N on Telescopio Nazionale Galileo, we constrained the mass of EPIC 247418783b to M_p = 6.49 $\pm$ 1.16 M_Earth. We found it necessary to model correlated stellar activity radial velocity signals with a Gaussian process in order to more accurately model the effect of stellar noise on our data; the addition of the Gaussian process also improved the precision of this mass measurement. With a bulk density of 8.84+2.50-2.03 g cm-3, the planet is consistent with an Earth-like rock/iron composition and no substantial gaseous envelope. Such an envelope, if it existed in the past, was likely eroded away by photo-evaporation during the first billion years of the star's lifetime.

astro-ph.EP↗

arXiv2017

Precise Masses in the WASP-47 System

We present precise radial velocity observations of WASP-47, a star known to host a hot Jupiter, a distant Jovian companion, and, uniquely, two additional transiting planets in short-period orbits: a super-Earth in a ~19 hour orbit, and a Neptune in a ~9 day orbit. We analyze our observations from the HARPS-N spectrograph along with previously published data to measure the most precise planet masses yet for this system. When combined with new stellar parameters and reanalyzed transit photometry, our mass measurements place strong constraints on the compositions of the two small planets. We find unlike most other ultra-short-period planets, the inner planet, WASP-47 e, has a mass (6.83 +/- 0.66 Me) and radius (1.810 +/- 0.027 Re) inconsistent with an Earth-like composition. Instead, WASP-47 e likely has a volatile-rich envelope surrounding an Earth-like core and mantle. We also perform a dynamical analysis to constrain the orbital inclination of WASP-47 c, the outer Jovian planet. This planet likely orbits close to the plane of the inner three planets, suggesting a quiet dynamical history for the system. Our dynamical constraints also imply that WASP-47 c is much more likely to transit than a geometric calculation would suggest. We calculate a transit probability for WASP-47 c of about 10%, more than an order of magnitude larger than the geometric transit probability of 0.6%.

astro-ph.EP↗