arXiv subjects

Dong Gyun Kang

Publications and source records attributed to Dong Gyun Kang.

3 recordsLinked to original sources

arXiv2026

Attention Function as an Intrinsic Inductive Bias: How Models' Behavior Diverges in Novel Contexts

Developmental psychology holds that certain priors are given to infants prior to experience rather than induced from data, and that the influence of such priors is suppressed under strong, well-constrained conditions but reasserts itself under weak ones. We ask whether an analogous principle holds for the Transformer: can the activation function given to attention heads serve as an intrinsic inductive bias? We propose Mixture of Function Attention (MoFA), a parameter-free modification to multi-head attention that fixes a ratio of softmax and sigmoid heads before training. Across five ratios, a 124M-parameter GPT-2 model, and five seeds, we find that this given ratio has little effect in-distribution -- differences between ratios are statistically negligible for moderate mixtures and remain small even at the extremes -- but its influence re-emerges sharply under zero-shot distribution shift across 15 out-of-distribution domains. Perplexity gaps between ratios widen by more than an order of magnitude on several domains, and the best-performing ratio tracks a single axis of domain structure, separating short, informal text (softmax-favoring) from technical, long-form text (sigmoid-favoring), that explains 78.3% of the variance in domain response. This reorganization is visible at the head level: sigmoid heads show an accelerating drop in attention entropy as their ratio increases, while softmax heads respond more modestly, yielding a consistent division of labor between the two head types. Our results suggest that activation choice functions as a given prior whose influence is masked in-distribution and re-emerges out-of-distribution.

cs.LG↗

arXiv2026

Chronic Kidney Disease Prognosis Prediction Using Transformer

Chronic Kidney Disease (CKD) affects nearly 10\% of the global population and often progresses to end-stage renal failure. Accurate prognosis prediction is vital for timely interventions and resource optimization. We present a transformer-based framework for predicting CKD progression using multi-modal electronic health records (EHR) from the Seoul National University Hospital OMOP Common Data Model. Our approach (\textbf{ProQ-BERT}) integrates demographic, clinical, and laboratory data, employing quantization-based tokenization for continuous lab values and attention mechanisms for interpretability. The model was pretrained with masked language modeling and fine-tuned for binary classification tasks predicting progression from stage 3a to stage 5 across varying follow-up and assessment periods. Evaluated on a cohort of 91,816 patients, our model consistently outperformed CEHR-BERT, achieving ROC-AUC up to 0.995 and PR-AUC up to 0.989 for short-term prediction. These results highlight the effectiveness of transformer architectures and temporal design choices in clinical prognosis modeling, offering a promising direction for personalized CKD care.

cs.AI↗

arXiv2026

Hierarchical Modeling of ICD Codes in EHR Foundation Models

Electronic health record foundation models typically treat ICD diagnosis codes as flat tokens, overlooking the clinically meaningful hierarchical structure that captures disease families, subcategories, and fine-grained diagnostic detail. As a result, existing EHR representation learning methods do not explicitly exploit the hierarchical structure already present in the coding system. In this work, we study ICD-10-CM hierarchy as a general inductive bias for clinical representation learning. We investigate two complementary mechanisms for incorporating hierarchy: first, by augmenting diagnosis sequences in a BERT-style transformer with tokens corresponding to different levels of the ICD hierarchy, and second, by injecting hierarchy into graph-based code representations through hierarchy-aware edges combined with diagnosis co-occurrence structure. Across these settings, we evaluate whether explicit hierarchy improves downstream prediction, which levels of the hierarchy are most useful, whether hierarchy encoding improves transfer across datasets, and how hierarchy reshapes embedding similarity structure. We conduct experiments on two large-scale real-world clinical datasets: MIMIC-IV, used for pretraining and in-domain evaluation, and eICU, used to assess cross-dataset transfer via frozen encoder probing. Our findings show that explicitly encoding ICD hierarchy improves over flat code representations in both in-domain and cross-dataset settings, while revealing that the most useful level of hierarchy depends on both the task and the modeling approach. More broadly, we focus on hierarchy-aware EHR representation learning and show that the benefits of encoding hierarchy are generalizable across modeling settings and hierarchy levels.

cs.AI↗